miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23279 3' -58.8 NC_005259.1 + 54563 0.66 0.622368
Target:  5'- aCuuGcGCGAGcucaguGAGCuugucGCGGUGGGCAa -3'
miRNA:   3'- -GggC-CGCUCuu----CUCG-----CGCCACUCGUc -5'
23279 3' -58.8 NC_005259.1 + 8632 0.66 0.611847
Target:  5'- aUCCGGCGAGAAuGGCgggcacgaggcuGUGGUcGGGCu- -3'
miRNA:   3'- -GGGCCGCUCUUcUCG------------CGCCA-CUCGuc -5'
23279 3' -58.8 NC_005259.1 + 11722 0.66 0.601342
Target:  5'- gCCaCGGCGAGGcucAGAuCGaUGGUGcGCAGa -3'
miRNA:   3'- -GG-GCCGCUCU---UCUcGC-GCCACuCGUC- -5'
23279 3' -58.8 NC_005259.1 + 50156 0.66 0.600292
Target:  5'- aUCCGGCGcGu-GAGCgaGCGGUGGaaugcccGCAGa -3'
miRNA:   3'- -GGGCCGCuCuuCUCG--CGCCACU-------CGUC- -5'
23279 3' -58.8 NC_005259.1 + 38996 0.66 0.580412
Target:  5'- gCCCaGCcucGuuGAGCGCGGUGAcCAGa -3'
miRNA:   3'- -GGGcCGcu-CuuCUCGCGCCACUcGUC- -5'
23279 3' -58.8 NC_005259.1 + 8801 0.67 0.570002
Target:  5'- gCuuGGCGAGGAucuucucgcgccGGGC-CGGUGAGUu- -3'
miRNA:   3'- -GggCCGCUCUU------------CUCGcGCCACUCGuc -5'
23279 3' -58.8 NC_005259.1 + 41645 0.67 0.51878
Target:  5'- gCCGGUcugc-GGGCGCucGGUGAGCGGg -3'
miRNA:   3'- gGGCCGcucuuCUCGCG--CCACUCGUC- -5'
23279 3' -58.8 NC_005259.1 + 39844 0.68 0.498792
Target:  5'- gUCGGCGAcAGGAuGC-CGGUGAGCu- -3'
miRNA:   3'- gGGCCGCUcUUCU-CGcGCCACUCGuc -5'
23279 3' -58.8 NC_005259.1 + 61748 0.69 0.450433
Target:  5'- gUCCGGCGAGAucuGUGCGGc-GGCAa -3'
miRNA:   3'- -GGGCCGCUCUucuCGCGCCacUCGUc -5'
23279 3' -58.8 NC_005259.1 + 2027 0.69 0.404765
Target:  5'- aCCGGCaccuc-AGUGCGGUGGGCGGu -3'
miRNA:   3'- gGGCCGcucuucUCGCGCCACUCGUC- -5'
23279 3' -58.8 NC_005259.1 + 30211 0.7 0.395987
Target:  5'- gCCCGccGCGAGAGaaucacccacGAGCGCcgcacccGUGAGCGGa -3'
miRNA:   3'- -GGGC--CGCUCUU----------CUCGCGc------CACUCGUC- -5'
23279 3' -58.8 NC_005259.1 + 60586 0.7 0.387332
Target:  5'- cCCaCGGCGAGucGGGUGCcGUcaucGAGCAGc -3'
miRNA:   3'- -GG-GCCGCUCuuCUCGCGcCA----CUCGUC- -5'
23279 3' -58.8 NC_005259.1 + 41890 0.7 0.387332
Target:  5'- gCCGauacgcauGCGGGAuGAGCGCGG-GAGCu- -3'
miRNA:   3'- gGGC--------CGCUCUuCUCGCGCCaCUCGuc -5'
23279 3' -58.8 NC_005259.1 + 30496 0.7 0.378803
Target:  5'- aCCCGGCGAGAccuuGCGCGauguguUGAGCu- -3'
miRNA:   3'- -GGGCCGCUCUucu-CGCGCc-----ACUCGuc -5'
23279 3' -58.8 NC_005259.1 + 62832 0.7 0.353983
Target:  5'- gCCC-GCGAGGucgAGcGCGCGGUugacGAGCAGc -3'
miRNA:   3'- -GGGcCGCUCU---UCuCGCGCCA----CUCGUC- -5'
23279 3' -58.8 NC_005259.1 + 35654 0.71 0.307869
Target:  5'- gCUGGCGAGGguGGccAGCGCGGUG-GUGGu -3'
miRNA:   3'- gGGCCGCUCU--UC--UCGCGCCACuCGUC- -5'
23279 3' -58.8 NC_005259.1 + 58917 0.72 0.300645
Target:  5'- gUCGGCGGucuugucgucGgcGGGCGCGGUG-GCAGc -3'
miRNA:   3'- gGGCCGCU----------CuuCUCGCGCCACuCGUC- -5'
23279 3' -58.8 NC_005259.1 + 58025 0.74 0.218455
Target:  5'- gUCCGGCGAGAcAGGGCGCGGaagUGuucuuGCGu -3'
miRNA:   3'- -GGGCCGCUCU-UCUCGCGCC---ACu----CGUc -5'
23279 3' -58.8 NC_005259.1 + 32561 0.74 0.207663
Target:  5'- cCCCGGCGAGcgcGGGGauaGCGuUGGGCAGc -3'
miRNA:   3'- -GGGCCGCUCu--UCUCg--CGCcACUCGUC- -5'
23279 3' -58.8 NC_005259.1 + 26513 1.09 0.000658
Target:  5'- gCCCGGCGAGAAGAGCGCGGUGAGCAGc -3'
miRNA:   3'- -GGGCCGCUCUUCUCGCGCCACUCGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.