Results 41 - 50 of 50 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23279 | 5' | -55.6 | NC_005259.1 | + | 54637 | 0.66 | 0.785158 |
Target: 5'- aCGCGA---CACCGAGGCaaucaGGUCGCu -3' miRNA: 3'- -GUGCUagaGUGGCUCCGaca--UCGGCG- -5' |
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23279 | 5' | -55.6 | NC_005259.1 | + | 58847 | 0.66 | 0.745251 |
Target: 5'- -uCGGUCUCACCcucGGGCUc--GCCGUc -3' miRNA: 3'- guGCUAGAGUGGc--UCCGAcauCGGCG- -5' |
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23279 | 5' | -55.6 | NC_005259.1 | + | 60206 | 0.76 | 0.243759 |
Target: 5'- cCACGAUCUCGCCGAucucgucGGCgcugAGCuCGCu -3' miRNA: 3'- -GUGCUAGAGUGGCU-------CCGaca-UCG-GCG- -5' |
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23279 | 5' | -55.6 | NC_005259.1 | + | 60677 | 0.69 | 0.574697 |
Target: 5'- aCGCGuUCUgCACCGA-GCgGUGGCaCGCa -3' miRNA: 3'- -GUGCuAGA-GUGGCUcCGaCAUCG-GCG- -5' |
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23279 | 5' | -55.6 | NC_005259.1 | + | 60764 | 0.67 | 0.714125 |
Target: 5'- -uCGG-CUCGgCGAGGUUG-GGCUGCg -3' miRNA: 3'- guGCUaGAGUgGCUCCGACaUCGGCG- -5' |
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23279 | 5' | -55.6 | NC_005259.1 | + | 60884 | 0.67 | 0.70358 |
Target: 5'- gACGGUgUCACCGAaugcgGGCU-UGGCCa- -3' miRNA: 3'- gUGCUAgAGUGGCU-----CCGAcAUCGGcg -5' |
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23279 | 5' | -55.6 | NC_005259.1 | + | 62111 | 0.66 | 0.784187 |
Target: 5'- uCGCGcucguaGUCagUCACCGAGGUgaucGUcucgaccaccucaGGCCGCa -3' miRNA: 3'- -GUGC------UAG--AGUGGCUCCGa---CA-------------UCGGCG- -5' |
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23279 | 5' | -55.6 | NC_005259.1 | + | 62583 | 0.75 | 0.277124 |
Target: 5'- gACGAcCUCGCCcucgaugaGAGGCUGUGugagcugacGCCGCa -3' miRNA: 3'- gUGCUaGAGUGG--------CUCCGACAU---------CGGCG- -5' |
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23279 | 5' | -55.6 | NC_005259.1 | + | 63104 | 0.66 | 0.775384 |
Target: 5'- uGCGAaCUCACggcagccguCGAGGgUggugaggucGUAGCCGCu -3' miRNA: 3'- gUGCUaGAGUG---------GCUCCgA---------CAUCGGCG- -5' |
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23279 | 5' | -55.6 | NC_005259.1 | + | 67943 | 0.67 | 0.671584 |
Target: 5'- gAUGAUCUUGCggugCGGGuuguGCUGUAGCgCGCg -3' miRNA: 3'- gUGCUAGAGUG----GCUC----CGACAUCG-GCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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