miRNA display CGI


Results 41 - 50 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23279 5' -55.6 NC_005259.1 + 12044 0.69 0.574697
Target:  5'- -cCGGUaCUCACCGAGGCcg-AGCUcuGCg -3'
miRNA:   3'- guGCUA-GAGUGGCUCCGacaUCGG--CG- -5'
23279 5' -55.6 NC_005259.1 + 49067 0.69 0.574697
Target:  5'- gGCGGUUggcgcaagggaUCGCuCGAGGgUGUcauGGCCGCc -3'
miRNA:   3'- gUGCUAG-----------AGUG-GCUCCgACA---UCGGCG- -5'
23279 5' -55.6 NC_005259.1 + 8636 0.69 0.574697
Target:  5'- gGCGAgaauggCggGCaCGAGGCUGUGGUCGg -3'
miRNA:   3'- gUGCUa-----GagUG-GCUCCGACAUCGGCg -5'
23279 5' -55.6 NC_005259.1 + 54095 0.7 0.542913
Target:  5'- uCGCGca-UCACCggggucaacguGAGGCUGacaUAGCCGCu -3'
miRNA:   3'- -GUGCuagAGUGG-----------CUCCGAC---AUCGGCG- -5'
23279 5' -55.6 NC_005259.1 + 45395 0.71 0.491358
Target:  5'- uCGgGGUCgcCGCCGAGcgcGCUGaUGGCCGCc -3'
miRNA:   3'- -GUgCUAGa-GUGGCUC---CGAC-AUCGGCG- -5'
23279 5' -55.6 NC_005259.1 + 42932 0.71 0.491358
Target:  5'- gCAUGAggccCUCGCCGuGGGCga-GGCCGCc -3'
miRNA:   3'- -GUGCUa---GAGUGGC-UCCGacaUCGGCG- -5'
23279 5' -55.6 NC_005259.1 + 30540 0.71 0.491358
Target:  5'- gCAUGAUCauggcCACCGAgcGGUUGUugacgcccuuGGCCGCa -3'
miRNA:   3'- -GUGCUAGa----GUGGCU--CCGACA----------UCGGCG- -5'
23279 5' -55.6 NC_005259.1 + 38650 0.71 0.477323
Target:  5'- gGCGAaCUCGCCGAaaucgaccaccucGCUGuUGGCCGCc -3'
miRNA:   3'- gUGCUaGAGUGGCUc------------CGAC-AUCGGCG- -5'
23279 5' -55.6 NC_005259.1 + 14169 0.71 0.442185
Target:  5'- --gGAUCUCGCCG-GGCggGUGGCaacCGCu -3'
miRNA:   3'- gugCUAGAGUGGCuCCGa-CAUCG---GCG- -5'
23279 5' -55.6 NC_005259.1 + 26548 1.1 0.000999
Target:  5'- cCACGAUCUCACCGAGGCUGUAGCCGCc -3'
miRNA:   3'- -GUGCUAGAGUGGCUCCGACAUCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.