miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23280 3' -55.2 NC_005259.1 + 27988 0.66 0.807338
Target:  5'- cCCUuggGUggUGCGGgugcCGGGGCgGG-GUCg -3'
miRNA:   3'- -GGA---CAuuGCGUCa---GCUCCGgCCaCAG- -5'
23280 3' -55.2 NC_005259.1 + 34964 0.66 0.807338
Target:  5'- aCUGUGAauCAG---GGGUCGGUGUCg -3'
miRNA:   3'- gGACAUUgcGUCagcUCCGGCCACAG- -5'
23280 3' -55.2 NC_005259.1 + 28952 0.67 0.717745
Target:  5'- uCCUGcgcCGCAucGcCGAGGUCGGUGcCg -3'
miRNA:   3'- -GGACauuGCGU--CaGCUCCGGCCACaG- -5'
23280 3' -55.2 NC_005259.1 + 32512 0.69 0.643094
Target:  5'- aCC-GUGAgGUAGUCGAGGCgGGcGg- -3'
miRNA:   3'- -GGaCAUUgCGUCAGCUCCGgCCaCag -5'
23280 3' -55.2 NC_005259.1 + 27459 0.69 0.589272
Target:  5'- --cGUcGCGCGGgaaaUUGGGGCCGGgGUCg -3'
miRNA:   3'- ggaCAuUGCGUC----AGCUCCGGCCaCAG- -5'
23280 3' -55.2 NC_005259.1 + 35003 0.7 0.536298
Target:  5'- cCCUu--ACGCuG-CGAGGCCGGUGa- -3'
miRNA:   3'- -GGAcauUGCGuCaGCUCCGGCCACag -5'
23280 3' -55.2 NC_005259.1 + 58782 0.7 0.536298
Target:  5'- gCUGU-GCGcCGGUCGAGG-CGGUGa- -3'
miRNA:   3'- gGACAuUGC-GUCAGCUCCgGCCACag -5'
23280 3' -55.2 NC_005259.1 + 16791 0.71 0.519679
Target:  5'- --gGUcGACGCGGUCGcguacaucgcgcucgGGGCCGGgGUCa -3'
miRNA:   3'- ggaCA-UUGCGUCAGC---------------UCCGGCCaCAG- -5'
23280 3' -55.2 NC_005259.1 + 4608 0.71 0.515556
Target:  5'- --aGgcACGCuGUCG-GGCCGGUGg- -3'
miRNA:   3'- ggaCauUGCGuCAGCuCCGGCCACag -5'
23280 3' -55.2 NC_005259.1 + 5070 0.71 0.485079
Target:  5'- --cGUGG-GCcgGGUCGAcgGGCCGGUGUCa -3'
miRNA:   3'- ggaCAUUgCG--UCAGCU--CCGGCCACAG- -5'
23280 3' -55.2 NC_005259.1 + 44150 0.74 0.324029
Target:  5'- --gGUGAacgUGCGGUCGAGcagcgcGCCGGUGUCg -3'
miRNA:   3'- ggaCAUU---GCGUCAGCUC------CGGCCACAG- -5'
23280 3' -55.2 NC_005259.1 + 64022 0.76 0.246984
Target:  5'- gCCcGaGGCGCGG-CGAGGCCGGUGa- -3'
miRNA:   3'- -GGaCaUUGCGUCaGCUCCGGCCACag -5'
23280 3' -55.2 NC_005259.1 + 25671 1.11 0.001146
Target:  5'- cCCUGUAACGCAGUCGAGGCCGGUGUCc -3'
miRNA:   3'- -GGACAUUGCGUCAGCUCCGGCCACAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.