miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23281 5' -57.4 NC_005259.1 + 68873 0.66 0.665122
Target:  5'- cCGcGCCGGGcGCGCCGAugagguagaugAgGCGguGGu -3'
miRNA:   3'- -GCuCGGCCCuUGCGGCU-----------UgCGUguCU- -5'
23281 5' -57.4 NC_005259.1 + 67428 0.69 0.488282
Target:  5'- gGuGCCGGGcucACGCuUGAGCGCGuCGGGg -3'
miRNA:   3'- gCuCGGCCCu--UGCG-GCUUGCGU-GUCU- -5'
23281 5' -57.4 NC_005259.1 + 66212 0.66 0.707057
Target:  5'- -aGGCgCGGucGCGCCGA-CGCACAc- -3'
miRNA:   3'- gcUCG-GCCcuUGCGGCUuGCGUGUcu -5'
23281 5' -57.4 NC_005259.1 + 65731 0.68 0.553273
Target:  5'- gCGAGuuGGGGucgacccauuggauCGCCGAGuagugguaccCGUACAGAu -3'
miRNA:   3'- -GCUCggCCCUu-------------GCGGCUU----------GCGUGUCU- -5'
23281 5' -57.4 NC_005259.1 + 63658 0.71 0.416142
Target:  5'- -uGGCCGGG-ACGCCGGacaccucgggcaccgGCGCGcCGGGg -3'
miRNA:   3'- gcUCGGCCCuUGCGGCU---------------UGCGU-GUCU- -5'
23281 5' -57.4 NC_005259.1 + 60592 0.71 0.412527
Target:  5'- gCGAGUCGGGugcCGUcauCGAGCaGCACAGGc -3'
miRNA:   3'- -GCUCGGCCCuu-GCG---GCUUG-CGUGUCU- -5'
23281 5' -57.4 NC_005259.1 + 60533 0.67 0.643943
Target:  5'- cCGGGCCGGGAcGCaGCCGcuCGUcgGCAu- -3'
miRNA:   3'- -GCUCGGCCCU-UG-CGGCuuGCG--UGUcu -5'
23281 5' -57.4 NC_005259.1 + 58143 0.68 0.559513
Target:  5'- uGAGCCGGaucucaucGAAcuCGUCG-GCGCACGGGa -3'
miRNA:   3'- gCUCGGCC--------CUU--GCGGCuUGCGUGUCU- -5'
23281 5' -57.4 NC_005259.1 + 57761 0.7 0.421601
Target:  5'- gCGAGCCGcGAGCGCCugcuGAaucuGCGCGuCGGAg -3'
miRNA:   3'- -GCUCGGCcCUUGCGG----CU----UGCGU-GUCU- -5'
23281 5' -57.4 NC_005259.1 + 55430 0.78 0.135206
Target:  5'- cCGAGCCGacGACGCCGAcgaacGCGUACAGGg -3'
miRNA:   3'- -GCUCGGCccUUGCGGCU-----UGCGUGUCU- -5'
23281 5' -57.4 NC_005259.1 + 54007 0.66 0.69665
Target:  5'- --cGCCGGGGuccaccagcgACGCuCGGGCGCGguGc -3'
miRNA:   3'- gcuCGGCCCU----------UGCG-GCUUGCGUguCu -5'
23281 5' -57.4 NC_005259.1 + 52168 0.68 0.580446
Target:  5'- cCGAGgCGcucaugcagcaGGAccGCGCCGAcaACGCACGGc -3'
miRNA:   3'- -GCUCgGC-----------CCU--UGCGGCU--UGCGUGUCu -5'
23281 5' -57.4 NC_005259.1 + 51492 0.68 0.549125
Target:  5'- --cGCCGGGGAuaggucgacgcCGCCGAucucgACGCGCGuGAc -3'
miRNA:   3'- gcuCGGCCCUU-----------GCGGCU-----UGCGUGU-CU- -5'
23281 5' -57.4 NC_005259.1 + 50445 0.68 0.538797
Target:  5'- gCGGGCuCGGGGuCGCCGGucuCGCugAu- -3'
miRNA:   3'- -GCUCG-GCCCUuGCGGCUu--GCGugUcu -5'
23281 5' -57.4 NC_005259.1 + 50392 0.71 0.412527
Target:  5'- aCGuGUCGcGGcuCGCCGAGCGCGCcGGu -3'
miRNA:   3'- -GCuCGGC-CCuuGCGGCUUGCGUGuCU- -5'
23281 5' -57.4 NC_005259.1 + 48602 0.68 0.528537
Target:  5'- uCGAGCgCGGGcgcuacCGCCGuGCGCACu-- -3'
miRNA:   3'- -GCUCG-GCCCuu----GCGGCuUGCGUGucu -5'
23281 5' -57.4 NC_005259.1 + 47068 0.66 0.654543
Target:  5'- uGAGCgaGGcGAGCGCCGAgacgAUGgGCAGc -3'
miRNA:   3'- gCUCGg-CC-CUUGCGGCU----UGCgUGUCu -5'
23281 5' -57.4 NC_005259.1 + 46990 0.66 0.69665
Target:  5'- uCGGGCCGaGGGuGCGCC--ACGCGaGGAa -3'
miRNA:   3'- -GCUCGGC-CCU-UGCGGcuUGCGUgUCU- -5'
23281 5' -57.4 NC_005259.1 + 45818 0.67 0.643943
Target:  5'- gCGuAGCCGGGGaugaccAUGCCGucCGCACcaccGGGg -3'
miRNA:   3'- -GC-UCGGCCCU------UGCGGCuuGCGUG----UCU- -5'
23281 5' -57.4 NC_005259.1 + 45630 0.69 0.488282
Target:  5'- cCGGGCCGGGcagcGCGCCGGugcCGC-CGuGAa -3'
miRNA:   3'- -GCUCGGCCCu---UGCGGCUu--GCGuGU-CU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.