Results 21 - 40 of 40 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23281 | 5' | -57.4 | NC_005259.1 | + | 45630 | 0.69 | 0.488282 |
Target: 5'- cCGGGCCGGGcagcGCGCCGGugcCGC-CGuGAa -3' miRNA: 3'- -GCUCGGCCCu---UGCGGCUu--GCGuGU-CU- -5' |
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23281 | 5' | -57.4 | NC_005259.1 | + | 45818 | 0.67 | 0.643943 |
Target: 5'- gCGuAGCCGGGGaugaccAUGCCGucCGCACcaccGGGg -3' miRNA: 3'- -GC-UCGGCCCU------UGCGGCuuGCGUG----UCU- -5' |
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23281 | 5' | -57.4 | NC_005259.1 | + | 46990 | 0.66 | 0.69665 |
Target: 5'- uCGGGCCGaGGGuGCGCC--ACGCGaGGAa -3' miRNA: 3'- -GCUCGGC-CCU-UGCGGcuUGCGUgUCU- -5' |
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23281 | 5' | -57.4 | NC_005259.1 | + | 47068 | 0.66 | 0.654543 |
Target: 5'- uGAGCgaGGcGAGCGCCGAgacgAUGgGCAGc -3' miRNA: 3'- gCUCGg-CC-CUUGCGGCU----UGCgUGUCu -5' |
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23281 | 5' | -57.4 | NC_005259.1 | + | 48602 | 0.68 | 0.528537 |
Target: 5'- uCGAGCgCGGGcgcuacCGCCGuGCGCACu-- -3' miRNA: 3'- -GCUCG-GCCCuu----GCGGCuUGCGUGucu -5' |
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23281 | 5' | -57.4 | NC_005259.1 | + | 50392 | 0.71 | 0.412527 |
Target: 5'- aCGuGUCGcGGcuCGCCGAGCGCGCcGGu -3' miRNA: 3'- -GCuCGGC-CCuuGCGGCUUGCGUGuCU- -5' |
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23281 | 5' | -57.4 | NC_005259.1 | + | 50445 | 0.68 | 0.538797 |
Target: 5'- gCGGGCuCGGGGuCGCCGGucuCGCugAu- -3' miRNA: 3'- -GCUCG-GCCCUuGCGGCUu--GCGugUcu -5' |
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23281 | 5' | -57.4 | NC_005259.1 | + | 51492 | 0.68 | 0.549125 |
Target: 5'- --cGCCGGGGAuaggucgacgcCGCCGAucucgACGCGCGuGAc -3' miRNA: 3'- gcuCGGCCCUU-----------GCGGCU-----UGCGUGU-CU- -5' |
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23281 | 5' | -57.4 | NC_005259.1 | + | 52168 | 0.68 | 0.580446 |
Target: 5'- cCGAGgCGcucaugcagcaGGAccGCGCCGAcaACGCACGGc -3' miRNA: 3'- -GCUCgGC-----------CCU--UGCGGCU--UGCGUGUCu -5' |
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23281 | 5' | -57.4 | NC_005259.1 | + | 54007 | 0.66 | 0.69665 |
Target: 5'- --cGCCGGGGuccaccagcgACGCuCGGGCGCGguGc -3' miRNA: 3'- gcuCGGCCCU----------UGCG-GCUUGCGUguCu -5' |
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23281 | 5' | -57.4 | NC_005259.1 | + | 55430 | 0.78 | 0.135206 |
Target: 5'- cCGAGCCGacGACGCCGAcgaacGCGUACAGGg -3' miRNA: 3'- -GCUCGGCccUUGCGGCU-----UGCGUGUCU- -5' |
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23281 | 5' | -57.4 | NC_005259.1 | + | 57761 | 0.7 | 0.421601 |
Target: 5'- gCGAGCCGcGAGCGCCugcuGAaucuGCGCGuCGGAg -3' miRNA: 3'- -GCUCGGCcCUUGCGG----CU----UGCGU-GUCU- -5' |
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23281 | 5' | -57.4 | NC_005259.1 | + | 58143 | 0.68 | 0.559513 |
Target: 5'- uGAGCCGGaucucaucGAAcuCGUCG-GCGCACGGGa -3' miRNA: 3'- gCUCGGCC--------CUU--GCGGCuUGCGUGUCU- -5' |
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23281 | 5' | -57.4 | NC_005259.1 | + | 60533 | 0.67 | 0.643943 |
Target: 5'- cCGGGCCGGGAcGCaGCCGcuCGUcgGCAu- -3' miRNA: 3'- -GCUCGGCCCU-UG-CGGCuuGCG--UGUcu -5' |
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23281 | 5' | -57.4 | NC_005259.1 | + | 60592 | 0.71 | 0.412527 |
Target: 5'- gCGAGUCGGGugcCGUcauCGAGCaGCACAGGc -3' miRNA: 3'- -GCUCGGCCCuu-GCG---GCUUG-CGUGUCU- -5' |
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23281 | 5' | -57.4 | NC_005259.1 | + | 63658 | 0.71 | 0.416142 |
Target: 5'- -uGGCCGGG-ACGCCGGacaccucgggcaccgGCGCGcCGGGg -3' miRNA: 3'- gcUCGGCCCuUGCGGCU---------------UGCGU-GUCU- -5' |
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23281 | 5' | -57.4 | NC_005259.1 | + | 65731 | 0.68 | 0.553273 |
Target: 5'- gCGAGuuGGGGucgacccauuggauCGCCGAGuagugguaccCGUACAGAu -3' miRNA: 3'- -GCUCggCCCUu-------------GCGGCUU----------GCGUGUCU- -5' |
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23281 | 5' | -57.4 | NC_005259.1 | + | 66212 | 0.66 | 0.707057 |
Target: 5'- -aGGCgCGGucGCGCCGA-CGCACAc- -3' miRNA: 3'- gcUCG-GCCcuUGCGGCUuGCGUGUcu -5' |
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23281 | 5' | -57.4 | NC_005259.1 | + | 67428 | 0.69 | 0.488282 |
Target: 5'- gGuGCCGGGcucACGCuUGAGCGCGuCGGGg -3' miRNA: 3'- gCuCGGCCCu--UGCG-GCUUGCGU-GUCU- -5' |
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23281 | 5' | -57.4 | NC_005259.1 | + | 68873 | 0.66 | 0.665122 |
Target: 5'- cCGcGCCGGGcGCGCCGAugagguagaugAgGCGguGGu -3' miRNA: 3'- -GCuCGGCCCuUGCGGCU-----------UgCGUguCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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