Results 1 - 20 of 34 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23282 | 3' | -60.4 | NC_005259.1 | + | 28964 | 0.66 | 0.518061 |
Target: 5'- uCGCCGaGGUCGGUgccgaGGCcGCGAgcGCCCGc -3' miRNA: 3'- -GUGGCcCCAGUCG-----CCGaUGUU--CGGGC- -5' |
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23282 | 3' | -60.4 | NC_005259.1 | + | 9826 | 0.66 | 0.508065 |
Target: 5'- cCGCCGGGu---GCGGC-GCuGGCCCa -3' miRNA: 3'- -GUGGCCCcaguCGCCGaUGuUCGGGc -5' |
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23282 | 3' | -60.4 | NC_005259.1 | + | 45183 | 0.66 | 0.502108 |
Target: 5'- gCGCCGaGGUCAgcGCGGUgaugACGggcgaguucgcguugAGCCCGa -3' miRNA: 3'- -GUGGCcCCAGU--CGCCGa---UGU---------------UCGGGC- -5' |
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23282 | 3' | -60.4 | NC_005259.1 | + | 33052 | 0.66 | 0.482476 |
Target: 5'- uGCCGGGGUCGcucGCGuGCUucugguauccGCuggccaccuguagguAGGCCCGc -3' miRNA: 3'- gUGGCCCCAGU---CGC-CGA----------UG---------------UUCGGGC- -5' |
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23282 | 3' | -60.4 | NC_005259.1 | + | 47041 | 0.66 | 0.482476 |
Target: 5'- gGCCGGGGaUCuGCGcgagcguguuggugaGCgagGCGAGCgCCGa -3' miRNA: 3'- gUGGCCCC-AGuCGC---------------CGa--UGUUCG-GGC- -5' |
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23282 | 3' | -60.4 | NC_005259.1 | + | 44802 | 0.66 | 0.477626 |
Target: 5'- uCGCCGGuggccuggcccuuGGUCAGCaGCUccACGAGaUCCGa -3' miRNA: 3'- -GUGGCC-------------CCAGUCGcCGA--UGUUC-GGGC- -5' |
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23282 | 3' | -60.4 | NC_005259.1 | + | 15574 | 0.67 | 0.4728 |
Target: 5'- cCACCcucGGGGcCAGCGcgacgggccgcaugaGCUACGgcAGCCCc -3' miRNA: 3'- -GUGG---CCCCaGUCGC---------------CGAUGU--UCGGGc -5' |
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23282 | 3' | -60.4 | NC_005259.1 | + | 27388 | 0.67 | 0.468957 |
Target: 5'- gACCGGcGGcggugucggCAGCGGCgGC-AGCUCGg -3' miRNA: 3'- gUGGCC-CCa--------GUCGCCGaUGuUCGGGC- -5' |
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23282 | 3' | -60.4 | NC_005259.1 | + | 53518 | 0.67 | 0.468957 |
Target: 5'- uGCuCGuGGcCAGCGGC-ACGGGCUCGg -3' miRNA: 3'- gUG-GCcCCaGUCGCCGaUGUUCGGGC- -5' |
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23282 | 3' | -60.4 | NC_005259.1 | + | 41089 | 0.67 | 0.449988 |
Target: 5'- aGCCGGucguagucggcGGUCGGCGGUaugACGAugucggcgguGCCCGc -3' miRNA: 3'- gUGGCC-----------CCAGUCGCCGa--UGUU----------CGGGC- -5' |
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23282 | 3' | -60.4 | NC_005259.1 | + | 60536 | 0.67 | 0.440663 |
Target: 5'- gGCCGGGacgCAGCcGCUcgucgGCAuGCCCGg -3' miRNA: 3'- gUGGCCCca-GUCGcCGA-----UGUuCGGGC- -5' |
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23282 | 3' | -60.4 | NC_005259.1 | + | 53610 | 0.67 | 0.422348 |
Target: 5'- -gUCGGGGUCAGCaGGCguCGAGCggugCCGu -3' miRNA: 3'- guGGCCCCAGUCG-CCGauGUUCG----GGC- -5' |
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23282 | 3' | -60.4 | NC_005259.1 | + | 46292 | 0.67 | 0.422348 |
Target: 5'- aCAgCGGGGcCGccGUGGCUGCGuuguucgcGGCCCc -3' miRNA: 3'- -GUgGCCCCaGU--CGCCGAUGU--------UCGGGc -5' |
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23282 | 3' | -60.4 | NC_005259.1 | + | 13209 | 0.68 | 0.404499 |
Target: 5'- aCAgCGGGGcCAGCGGU---GGGCCuCGa -3' miRNA: 3'- -GUgGCCCCaGUCGCCGaugUUCGG-GC- -5' |
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23282 | 3' | -60.4 | NC_005259.1 | + | 68729 | 0.68 | 0.404499 |
Target: 5'- aACUGGGGUC-GCcGCUugcCGAGCUCGa -3' miRNA: 3'- gUGGCCCCAGuCGcCGAu--GUUCGGGC- -5' |
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23282 | 3' | -60.4 | NC_005259.1 | + | 45848 | 0.68 | 0.378636 |
Target: 5'- cCACCGGGGcCGGUGGgaccggGCAuGCCgGg -3' miRNA: 3'- -GUGGCCCCaGUCGCCga----UGUuCGGgC- -5' |
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23282 | 3' | -60.4 | NC_005259.1 | + | 49131 | 0.68 | 0.378636 |
Target: 5'- uCACCGGGGUCaAGCuGGC--CAAGCagauCGg -3' miRNA: 3'- -GUGGCCCCAG-UCG-CCGauGUUCGg---GC- -5' |
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23282 | 3' | -60.4 | NC_005259.1 | + | 28018 | 0.68 | 0.370266 |
Target: 5'- uCGCCGGGGUU-GCGcGCguugGCcAGCCaCGg -3' miRNA: 3'- -GUGGCCCCAGuCGC-CGa---UGuUCGG-GC- -5' |
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23282 | 3' | -60.4 | NC_005259.1 | + | 54102 | 0.69 | 0.353907 |
Target: 5'- uCACCGGGGUCAacgugaGGCUgACAuAGCCg- -3' miRNA: 3'- -GUGGCCCCAGUcg----CCGA-UGU-UCGGgc -5' |
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23282 | 3' | -60.4 | NC_005259.1 | + | 50426 | 0.69 | 0.345921 |
Target: 5'- gACCGGcucGGgCAGCGG-UGCGGGCUCGg -3' miRNA: 3'- gUGGCC---CCaGUCGCCgAUGUUCGGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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