miRNA display CGI


Results 21 - 34 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23282 3' -60.4 NC_005259.1 + 47041 0.66 0.482476
Target:  5'- gGCCGGGGaUCuGCGcgagcguguuggugaGCgagGCGAGCgCCGa -3'
miRNA:   3'- gUGGCCCC-AGuCGC---------------CGa--UGUUCG-GGC- -5'
23282 3' -60.4 NC_005259.1 + 49131 0.68 0.378636
Target:  5'- uCACCGGGGUCaAGCuGGC--CAAGCagauCGg -3'
miRNA:   3'- -GUGGCCCCAG-UCG-CCGauGUUCGg---GC- -5'
23282 3' -60.4 NC_005259.1 + 50426 0.69 0.345921
Target:  5'- gACCGGcucGGgCAGCGG-UGCGGGCUCGg -3'
miRNA:   3'- gUGGCC---CCaGUCGCCgAUGUUCGGGC- -5'
23282 3' -60.4 NC_005259.1 + 53518 0.67 0.468957
Target:  5'- uGCuCGuGGcCAGCGGC-ACGGGCUCGg -3'
miRNA:   3'- gUG-GCcCCaGUCGCCGaUGUUCGGGC- -5'
23282 3' -60.4 NC_005259.1 + 53610 0.67 0.422348
Target:  5'- -gUCGGGGUCAGCaGGCguCGAGCggugCCGu -3'
miRNA:   3'- guGGCCCCAGUCG-CCGauGUUCG----GGC- -5'
23282 3' -60.4 NC_005259.1 + 54006 0.7 0.286739
Target:  5'- aCGCCGGGGUCcaccAGCGacGCU-CGGGCgCGg -3'
miRNA:   3'- -GUGGCCCCAG----UCGC--CGAuGUUCGgGC- -5'
23282 3' -60.4 NC_005259.1 + 54102 0.69 0.353907
Target:  5'- uCACCGGGGUCAacgugaGGCUgACAuAGCCg- -3'
miRNA:   3'- -GUGGCCCCAGUcg----CCGA-UGU-UCGGgc -5'
23282 3' -60.4 NC_005259.1 + 55626 0.73 0.19272
Target:  5'- gGCCGGGaUCAG-GGCcuguagACGAGCCCGu -3'
miRNA:   3'- gUGGCCCcAGUCgCCGa-----UGUUCGGGC- -5'
23282 3' -60.4 NC_005259.1 + 56807 0.72 0.207488
Target:  5'- gAUCGGGGUCGGUGGCcacccauUGCGcGCCUa -3'
miRNA:   3'- gUGGCCCCAGUCGCCG-------AUGUuCGGGc -5'
23282 3' -60.4 NC_005259.1 + 58209 0.73 0.197705
Target:  5'- uGCCGgugucaGGGUCAGUGGCcuCGAGCUCGg -3'
miRNA:   3'- gUGGC------CCCAGUCGCCGauGUUCGGGC- -5'
23282 3' -60.4 NC_005259.1 + 60385 0.69 0.330341
Target:  5'- uCGCCGGa--CAGCGGCgagGCGAgGCCCa -3'
miRNA:   3'- -GUGGCCccaGUCGCCGa--UGUU-CGGGc -5'
23282 3' -60.4 NC_005259.1 + 60536 0.67 0.440663
Target:  5'- gGCCGGGacgCAGCcGCUcgucgGCAuGCCCGg -3'
miRNA:   3'- gUGGCCCca-GUCGcCGA-----UGUuCGGGC- -5'
23282 3' -60.4 NC_005259.1 + 66936 0.71 0.260271
Target:  5'- gACCGGGGUgAGCGGgacaccgGCGAGCUg- -3'
miRNA:   3'- gUGGCCCCAgUCGCCga-----UGUUCGGgc -5'
23282 3' -60.4 NC_005259.1 + 68729 0.68 0.404499
Target:  5'- aACUGGGGUC-GCcGCUugcCGAGCUCGa -3'
miRNA:   3'- gUGGCCCCAGuCGcCGAu--GUUCGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.