Results 21 - 34 of 34 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23282 | 3' | -60.4 | NC_005259.1 | + | 41089 | 0.67 | 0.449988 |
Target: 5'- aGCCGGucguagucggcGGUCGGCGGUaugACGAugucggcgguGCCCGc -3' miRNA: 3'- gUGGCC-----------CCAGUCGCCGa--UGUU----------CGGGC- -5' |
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23282 | 3' | -60.4 | NC_005259.1 | + | 33052 | 0.66 | 0.482476 |
Target: 5'- uGCCGGGGUCGcucGCGuGCUucugguauccGCuggccaccuguagguAGGCCCGc -3' miRNA: 3'- gUGGCCCCAGU---CGC-CGA----------UG---------------UUCGGGC- -5' |
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23282 | 3' | -60.4 | NC_005259.1 | + | 31933 | 0.72 | 0.208014 |
Target: 5'- gCACuCGGGGUCgaGGCGGUUACcucggguGCCUGa -3' miRNA: 3'- -GUG-GCCCCAG--UCGCCGAUGuu-----CGGGC- -5' |
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23282 | 3' | -60.4 | NC_005259.1 | + | 28964 | 0.66 | 0.518061 |
Target: 5'- uCGCCGaGGUCGGUgccgaGGCcGCGAgcGCCCGc -3' miRNA: 3'- -GUGGCcCCAGUCG-----CCGaUGUU--CGGGC- -5' |
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23282 | 3' | -60.4 | NC_005259.1 | + | 28018 | 0.68 | 0.370266 |
Target: 5'- uCGCCGGGGUU-GCGcGCguugGCcAGCCaCGg -3' miRNA: 3'- -GUGGCCCCAGuCGC-CGa---UGuUCGG-GC- -5' |
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23282 | 3' | -60.4 | NC_005259.1 | + | 27477 | 0.72 | 0.224345 |
Target: 5'- gGCCGGGGUCGGUguGGCcACc-GCCCc -3' miRNA: 3'- gUGGCCCCAGUCG--CCGaUGuuCGGGc -5' |
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23282 | 3' | -60.4 | NC_005259.1 | + | 27388 | 0.67 | 0.468957 |
Target: 5'- gACCGGcGGcggugucggCAGCGGCgGC-AGCUCGg -3' miRNA: 3'- gUGGCC-CCa--------GUCGCCGaUGuUCGGGC- -5' |
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23282 | 3' | -60.4 | NC_005259.1 | + | 25202 | 1.07 | 0.000584 |
Target: 5'- cCACCGGGGUCAGCGGCUACAAGCCCGc -3' miRNA: 3'- -GUGGCCCCAGUCGCCGAUGUUCGGGC- -5' |
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23282 | 3' | -60.4 | NC_005259.1 | + | 15574 | 0.67 | 0.4728 |
Target: 5'- cCACCcucGGGGcCAGCGcgacgggccgcaugaGCUACGgcAGCCCc -3' miRNA: 3'- -GUGG---CCCCaGUCGC---------------CGAUGU--UCGGGc -5' |
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23282 | 3' | -60.4 | NC_005259.1 | + | 13629 | 0.69 | 0.330341 |
Target: 5'- uCugCGGGccgcucaacGUCGaCGGCUACGcGCCCGg -3' miRNA: 3'- -GugGCCC---------CAGUcGCCGAUGUuCGGGC- -5' |
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23282 | 3' | -60.4 | NC_005259.1 | + | 13209 | 0.68 | 0.404499 |
Target: 5'- aCAgCGGGGcCAGCGGU---GGGCCuCGa -3' miRNA: 3'- -GUgGCCCCaGUCGCCGaugUUCGG-GC- -5' |
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23282 | 3' | -60.4 | NC_005259.1 | + | 10339 | 0.72 | 0.208014 |
Target: 5'- --aCGGGcUCGGCGGCaGCGGGCUCGa -3' miRNA: 3'- gugGCCCcAGUCGCCGaUGUUCGGGC- -5' |
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23282 | 3' | -60.4 | NC_005259.1 | + | 9826 | 0.66 | 0.508065 |
Target: 5'- cCGCCGGGu---GCGGC-GCuGGCCCa -3' miRNA: 3'- -GUGGCCCcaguCGCCGaUGuUCGGGc -5' |
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23282 | 3' | -60.4 | NC_005259.1 | + | 3126 | 0.71 | 0.253973 |
Target: 5'- gCACCGuGGG-CAGCGGacgGCAccGCCCGu -3' miRNA: 3'- -GUGGC-CCCaGUCGCCga-UGUu-CGGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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