Results 21 - 34 of 34 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23282 | 3' | -60.4 | NC_005259.1 | + | 56807 | 0.72 | 0.207488 |
Target: 5'- gAUCGGGGUCGGUGGCcacccauUGCGcGCCUa -3' miRNA: 3'- gUGGCCCCAGUCGCCG-------AUGUuCGGGc -5' |
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23282 | 3' | -60.4 | NC_005259.1 | + | 31933 | 0.72 | 0.208014 |
Target: 5'- gCACuCGGGGUCgaGGCGGUUACcucggguGCCUGa -3' miRNA: 3'- -GUG-GCCCCAG--UCGCCGAUGuu-----CGGGC- -5' |
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23282 | 3' | -60.4 | NC_005259.1 | + | 10339 | 0.72 | 0.208014 |
Target: 5'- --aCGGGcUCGGCGGCaGCGGGCUCGa -3' miRNA: 3'- gugGCCCcAGUCGCCGaUGUUCGGGC- -5' |
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23282 | 3' | -60.4 | NC_005259.1 | + | 43063 | 0.72 | 0.218784 |
Target: 5'- --aCGGGGUCGGUgaGGaacGCGAGCCCGu -3' miRNA: 3'- gugGCCCCAGUCG--CCga-UGUUCGGGC- -5' |
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23282 | 3' | -60.4 | NC_005259.1 | + | 27477 | 0.72 | 0.224345 |
Target: 5'- gGCCGGGGUCGGUguGGCcACc-GCCCc -3' miRNA: 3'- gUGGCCCCAGUCG--CCGaUGuuCGGGc -5' |
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23282 | 3' | -60.4 | NC_005259.1 | + | 3126 | 0.71 | 0.253973 |
Target: 5'- gCACCGuGGG-CAGCGGacgGCAccGCCCGu -3' miRNA: 3'- -GUGGC-CCCaGUCGCCga-UGUu-CGGGC- -5' |
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23282 | 3' | -60.4 | NC_005259.1 | + | 66936 | 0.71 | 0.260271 |
Target: 5'- gACCGGGGUgAGCGGgacaccgGCGAGCUg- -3' miRNA: 3'- gUGGCCCCAgUCGCCga-----UGUUCGGgc -5' |
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23282 | 3' | -60.4 | NC_005259.1 | + | 42058 | 0.71 | 0.273248 |
Target: 5'- -cUCGGGGUgGGCGGCUAgGuaucgcAGCaCCGa -3' miRNA: 3'- guGGCCCCAgUCGCCGAUgU------UCG-GGC- -5' |
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23282 | 3' | -60.4 | NC_005259.1 | + | 54006 | 0.7 | 0.286739 |
Target: 5'- aCGCCGGGGUCcaccAGCGacGCU-CGGGCgCGg -3' miRNA: 3'- -GUGGCCCCAG----UCGC--CGAuGUUCGgGC- -5' |
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23282 | 3' | -60.4 | NC_005259.1 | + | 13629 | 0.69 | 0.330341 |
Target: 5'- uCugCGGGccgcucaacGUCGaCGGCUACGcGCCCGg -3' miRNA: 3'- -GugGCCC---------CAGUcGCCGAUGUuCGGGC- -5' |
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23282 | 3' | -60.4 | NC_005259.1 | + | 60385 | 0.69 | 0.330341 |
Target: 5'- uCGCCGGa--CAGCGGCgagGCGAgGCCCa -3' miRNA: 3'- -GUGGCCccaGUCGCCGa--UGUU-CGGGc -5' |
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23282 | 3' | -60.4 | NC_005259.1 | + | 50426 | 0.69 | 0.345921 |
Target: 5'- gACCGGcucGGgCAGCGG-UGCGGGCUCGg -3' miRNA: 3'- gUGGCC---CCaGUCGCCgAUGUUCGGGC- -5' |
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23282 | 3' | -60.4 | NC_005259.1 | + | 54102 | 0.69 | 0.353907 |
Target: 5'- uCACCGGGGUCAacgugaGGCUgACAuAGCCg- -3' miRNA: 3'- -GUGGCCCCAGUcg----CCGA-UGU-UCGGgc -5' |
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23282 | 3' | -60.4 | NC_005259.1 | + | 28964 | 0.66 | 0.518061 |
Target: 5'- uCGCCGaGGUCGGUgccgaGGCcGCGAgcGCCCGc -3' miRNA: 3'- -GUGGCcCCAGUCG-----CCGaUGUU--CGGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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