miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23282 5' -56.1 NC_005259.1 + 51264 0.66 0.727852
Target:  5'- gCUCGcGGUGGUcacGGUGCgcggcaagCGgcaGCGCCCg -3'
miRNA:   3'- -GAGC-CCGUCAa--CCACGa-------GUa--CGUGGG- -5'
23282 5' -56.1 NC_005259.1 + 58793 0.66 0.722627
Target:  5'- gUCGaGGCGGUgauugccucggcgGGcucgcgcUGCUCG-GCACCCu -3'
miRNA:   3'- gAGC-CCGUCAa------------CC-------ACGAGUaCGUGGG- -5'
23282 5' -56.1 NC_005259.1 + 44484 0.66 0.717381
Target:  5'- -cCGGGcCAGUUGGUGacgUAgaccgggGUGCCCu -3'
miRNA:   3'- gaGCCC-GUCAACCACga-GUa------CGUGGG- -5'
23282 5' -56.1 NC_005259.1 + 41011 0.66 0.711058
Target:  5'- aUCGGGcCGGUccacagugUGGUGCcgcugucaacgUCccagaucgucaccgaGUGCGCCCa -3'
miRNA:   3'- gAGCCC-GUCA--------ACCACG-----------AG---------------UACGUGGG- -5'
23282 5' -56.1 NC_005259.1 + 50431 0.66 0.696205
Target:  5'- gCUCGGGCAGc-GGUGCgggcUCGggGuCGCCg -3'
miRNA:   3'- -GAGCCCGUCaaCCACG----AGUa-C-GUGGg -5'
23282 5' -56.1 NC_005259.1 + 36311 0.67 0.662939
Target:  5'- gCUUGGGCGGgcGGga-UCAUGUuggcaaacgaaauGCCCg -3'
miRNA:   3'- -GAGCCCGUCaaCCacgAGUACG-------------UGGG- -5'
23282 5' -56.1 NC_005259.1 + 27364 0.67 0.653217
Target:  5'- aUCGGGC--UUGGUGC-CcgGCACg- -3'
miRNA:   3'- gAGCCCGucAACCACGaGuaCGUGgg -5'
23282 5' -56.1 NC_005259.1 + 3334 0.67 0.653217
Target:  5'- -cCGGGCAGcucUGcGUGCUCG-GCACg- -3'
miRNA:   3'- gaGCCCGUCa--AC-CACGAGUaCGUGgg -5'
23282 5' -56.1 NC_005259.1 + 4685 0.67 0.653217
Target:  5'- gCUCGGGCcgacagcucGGccccgUGGUGCgaugaccGCGCCCg -3'
miRNA:   3'- -GAGCCCG---------UCa----ACCACGagua---CGUGGG- -5'
23282 5' -56.1 NC_005259.1 + 19969 0.68 0.606681
Target:  5'- gCUCGGcGguGUgGGUGCcCGUcuacaacgaggacgGCACCCc -3'
miRNA:   3'- -GAGCC-CguCAaCCACGaGUA--------------CGUGGG- -5'
23282 5' -56.1 NC_005259.1 + 8260 0.68 0.577614
Target:  5'- uCUUGGGCgcgacguaGGUguuguaccgGGUGCgCggGCACCCg -3'
miRNA:   3'- -GAGCCCG--------UCAa--------CCACGaGuaCGUGGG- -5'
23282 5' -56.1 NC_005259.1 + 13457 0.72 0.371521
Target:  5'- gUCGGcGCGGcgcUGGUGCUCAccGCgcuGCCCg -3'
miRNA:   3'- gAGCC-CGUCa--ACCACGAGUa-CG---UGGG- -5'
23282 5' -56.1 NC_005259.1 + 34732 0.73 0.338245
Target:  5'- gUCGGGgAaaccGUUGGUGaUCGUGCGCCa -3'
miRNA:   3'- gAGCCCgU----CAACCACgAGUACGUGGg -5'
23282 5' -56.1 NC_005259.1 + 9137 0.73 0.338245
Target:  5'- -aCGGGCAGcc-GUGCUCGUGC-CCg -3'
miRNA:   3'- gaGCCCGUCaacCACGAGUACGuGGg -5'
23282 5' -56.1 NC_005259.1 + 58561 0.73 0.322438
Target:  5'- gCUCGGGCGGUUGGgccggaucgcgGCgcg-GCugCCg -3'
miRNA:   3'- -GAGCCCGUCAACCa----------CGaguaCGugGG- -5'
23282 5' -56.1 NC_005259.1 + 34893 0.73 0.307189
Target:  5'- cCUCGGGCAGgacgGGccGCUCggGCAUCa -3'
miRNA:   3'- -GAGCCCGUCaa--CCa-CGAGuaCGUGGg -5'
23282 5' -56.1 NC_005259.1 + 25236 1.11 0.000758
Target:  5'- cCUCGGGCAGUUGGUGCUCAUGCACCCc -3'
miRNA:   3'- -GAGCCCGUCAACCACGAGUACGUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.