Results 1 - 20 of 34 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23283 | 3' | -56.2 | NC_005259.1 | + | 24836 | 1.1 | 0.000886 |
Target: 5'- gCACCGACCAAGCAGUCCGUGCGCUACg -3' miRNA: 3'- -GUGGCUGGUUCGUCAGGCACGCGAUG- -5' |
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23283 | 3' | -56.2 | NC_005259.1 | + | 46904 | 0.8 | 0.105528 |
Target: 5'- gCGCCcGCCGAGCAGUCCGcgUGCGCcGCc -3' miRNA: 3'- -GUGGcUGGUUCGUCAGGC--ACGCGaUG- -5' |
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23283 | 3' | -56.2 | NC_005259.1 | + | 19061 | 0.76 | 0.213384 |
Target: 5'- cCACCGAugUCGGugucGCGGUCCG-GCGCUACg -3' miRNA: 3'- -GUGGCU--GGUU----CGUCAGGCaCGCGAUG- -5' |
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23283 | 3' | -56.2 | NC_005259.1 | + | 34449 | 0.74 | 0.268709 |
Target: 5'- uGCCGACCGGGCAG--CGUGuCGCUGa -3' miRNA: 3'- gUGGCUGGUUCGUCagGCAC-GCGAUg -5' |
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23283 | 3' | -56.2 | NC_005259.1 | + | 59020 | 0.72 | 0.343111 |
Target: 5'- uCAUCGACCucagaGAGCAGaUCCuugagGCGCUGCg -3' miRNA: 3'- -GUGGCUGG-----UUCGUC-AGGca---CGCGAUG- -5' |
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23283 | 3' | -56.2 | NC_005259.1 | + | 6536 | 0.72 | 0.375899 |
Target: 5'- aACCGGCCucggggcGAGCGGUgaagCUGUGCGCgGCg -3' miRNA: 3'- gUGGCUGG-------UUCGUCA----GGCACGCGaUG- -5' |
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23283 | 3' | -56.2 | NC_005259.1 | + | 207 | 0.71 | 0.39441 |
Target: 5'- gGCgCGACggCAAGCAGUUCGggcaGUGCUACg -3' miRNA: 3'- gUG-GCUG--GUUCGUCAGGCa---CGCGAUG- -5' |
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23283 | 3' | -56.2 | NC_005259.1 | + | 64131 | 0.71 | 0.412579 |
Target: 5'- cCGCCuGACCGAGCGGcCCGUcgGCGaUGCc -3' miRNA: 3'- -GUGG-CUGGUUCGUCaGGCA--CGCgAUG- -5' |
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23283 | 3' | -56.2 | NC_005259.1 | + | 64432 | 0.7 | 0.480012 |
Target: 5'- uCGCCGA-CGAGCuG-CCGggGCGCUGCc -3' miRNA: 3'- -GUGGCUgGUUCGuCaGGCa-CGCGAUG- -5' |
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23283 | 3' | -56.2 | NC_005259.1 | + | 19154 | 0.69 | 0.520875 |
Target: 5'- aCACCGAUCAGGgucgaGGUUCGUcgGCGCUcaACg -3' miRNA: 3'- -GUGGCUGGUUCg----UCAGGCA--CGCGA--UG- -5' |
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23283 | 3' | -56.2 | NC_005259.1 | + | 24349 | 0.69 | 0.540761 |
Target: 5'- cUACCG-CCGGGUgcucgcacaccgaGGUCUGgugGCGCUACc -3' miRNA: 3'- -GUGGCuGGUUCG-------------UCAGGCa--CGCGAUG- -5' |
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23283 | 3' | -56.2 | NC_005259.1 | + | 30810 | 0.68 | 0.563026 |
Target: 5'- aCACCuGAgUCGGGUAGUCCG-GCGCg-- -3' miRNA: 3'- -GUGG-CU-GGUUCGUCAGGCaCGCGaug -5' |
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23283 | 3' | -56.2 | NC_005259.1 | + | 67087 | 0.68 | 0.573717 |
Target: 5'- aCGCCGACCuuGGCccauuGGUCCGagguguacUGCccGCUGCg -3' miRNA: 3'- -GUGGCUGGu-UCG-----UCAGGC--------ACG--CGAUG- -5' |
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23283 | 3' | -56.2 | NC_005259.1 | + | 20507 | 0.68 | 0.584454 |
Target: 5'- uCAUCGGCgAcGguGUCCcgagcacggGUGCGCUGCc -3' miRNA: 3'- -GUGGCUGgUuCguCAGG---------CACGCGAUG- -5' |
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23283 | 3' | -56.2 | NC_005259.1 | + | 15391 | 0.68 | 0.584454 |
Target: 5'- aACCGugGCCGcGCAcUCCcaaggGUGCGCUGCg -3' miRNA: 3'- gUGGC--UGGUuCGUcAGG-----CACGCGAUG- -5' |
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23283 | 3' | -56.2 | NC_005259.1 | + | 10105 | 0.68 | 0.584454 |
Target: 5'- gGCC-ACCGAGCucaAGaCCGUGCGCa-- -3' miRNA: 3'- gUGGcUGGUUCG---UCaGGCACGCGaug -5' |
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23283 | 3' | -56.2 | NC_005259.1 | + | 5827 | 0.68 | 0.584454 |
Target: 5'- aCACCGcCCGAGacCAGaaCGUGCGCaUGCu -3' miRNA: 3'- -GUGGCuGGUUC--GUCagGCACGCG-AUG- -5' |
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23283 | 3' | -56.2 | NC_005259.1 | + | 26067 | 0.68 | 0.606036 |
Target: 5'- cCGCCG-CCGAGCAGUCCcccgagGcCGCcGCc -3' miRNA: 3'- -GUGGCuGGUUCGUCAGGca----C-GCGaUG- -5' |
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23283 | 3' | -56.2 | NC_005259.1 | + | 41626 | 0.68 | 0.606036 |
Target: 5'- gGCUGACCAugguGGCGGUgCCGgucugcggGCGCUc- -3' miRNA: 3'- gUGGCUGGU----UCGUCA-GGCa-------CGCGAug -5' |
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23283 | 3' | -56.2 | NC_005259.1 | + | 50499 | 0.68 | 0.606036 |
Target: 5'- aGCCGGUCGAuGUGGgCgGUGCGCUGCa -3' miRNA: 3'- gUGGCUGGUU-CGUCaGgCACGCGAUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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