miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23283 5' -56.4 NC_005259.1 + 61866 0.66 0.749169
Target:  5'- aCCGCCUCGCgu--GCCGCgugAUCa--- -3'
miRNA:   3'- -GGCGGAGCGagacUGGCGa--UAGcuca -5'
23283 5' -56.4 NC_005259.1 + 21060 0.66 0.749169
Target:  5'- gCCGCCaUCGUguggacgCguauGCCGCUGUCGAc- -3'
miRNA:   3'- -GGCGG-AGCGa------Gac--UGGCGAUAGCUca -5'
23283 5' -56.4 NC_005259.1 + 62402 0.66 0.739032
Target:  5'- cCCGCCU-GCUC-GACCacgGCacccgUAUCGGGUg -3'
miRNA:   3'- -GGCGGAgCGAGaCUGG---CG-----AUAGCUCA- -5'
23283 5' -56.4 NC_005259.1 + 19657 0.66 0.725703
Target:  5'- aCCGCCUCGggCa-GCCGCUacauccccggucagGUCGGGa -3'
miRNA:   3'- -GGCGGAGCgaGacUGGCGA--------------UAGCUCa -5'
23283 5' -56.4 NC_005259.1 + 4198 0.66 0.708052
Target:  5'- aCCGCaa-GCUC-GACaCGCUcAUCGAGa -3'
miRNA:   3'- -GGCGgagCGAGaCUG-GCGA-UAGCUCa -5'
23283 5' -56.4 NC_005259.1 + 3290 0.67 0.69652
Target:  5'- gCCGCCUCGCcggucccUCggcGAgCGCUgcGUCGAcGUg -3'
miRNA:   3'- -GGCGGAGCG-------AGa--CUgGCGA--UAGCU-CA- -5'
23283 5' -56.4 NC_005259.1 + 46941 0.67 0.67644
Target:  5'- cCCGCCgCGCcgCcGACCGC-GUUGAGc -3'
miRNA:   3'- -GGCGGaGCGa-GaCUGGCGaUAGCUCa -5'
23283 5' -56.4 NC_005259.1 + 35639 0.67 0.67644
Target:  5'- gCCGCCgcCGCU---GCCGCUggCGAGg -3'
miRNA:   3'- -GGCGGa-GCGAgacUGGCGAuaGCUCa -5'
23283 5' -56.4 NC_005259.1 + 52029 0.67 0.66581
Target:  5'- gCCGCCgcacugCGCgCUG-UCGCcGUCGAGg -3'
miRNA:   3'- -GGCGGa-----GCGaGACuGGCGaUAGCUCa -5'
23283 5' -56.4 NC_005259.1 + 37337 0.68 0.63378
Target:  5'- cUCGUUgUCGUUCUGuggguuGCCGCUGUgCGAGUa -3'
miRNA:   3'- -GGCGG-AGCGAGAC------UGGCGAUA-GCUCA- -5'
23283 5' -56.4 NC_005259.1 + 5400 0.68 0.612404
Target:  5'- aCCGUCgucaucaccCGCgCUGGCCGCcacGUCGAGg -3'
miRNA:   3'- -GGCGGa--------GCGaGACUGGCGa--UAGCUCa -5'
23283 5' -56.4 NC_005259.1 + 29669 0.7 0.487627
Target:  5'- aCCGCCUCGUUgCcgGacgcGCCGCaAUCGAGa -3'
miRNA:   3'- -GGCGGAGCGA-Ga-C----UGGCGaUAGCUCa -5'
23283 5' -56.4 NC_005259.1 + 29141 0.71 0.448606
Target:  5'- uUCGCCUCGCUC--ACCGCgcUCGGc- -3'
miRNA:   3'- -GGCGGAGCGAGacUGGCGauAGCUca -5'
23283 5' -56.4 NC_005259.1 + 39910 0.75 0.276268
Target:  5'- cCCGCCUCGauccgUCgagGGCCGC-GUCGAGg -3'
miRNA:   3'- -GGCGGAGCg----AGa--CUGGCGaUAGCUCa -5'
23283 5' -56.4 NC_005259.1 + 8688 0.75 0.269533
Target:  5'- gCCGCCUCGa--UG-UCGCUGUCGAGg -3'
miRNA:   3'- -GGCGGAGCgagACuGGCGAUAGCUCa -5'
23283 5' -56.4 NC_005259.1 + 38669 0.76 0.231879
Target:  5'- aCCaCCUCGCUgUUGGCCGCcggGUCGAGg -3'
miRNA:   3'- -GGcGGAGCGA-GACUGGCGa--UAGCUCa -5'
23283 5' -56.4 NC_005259.1 + 67192 0.76 0.209313
Target:  5'- cCCGCCUCGuCUCccucGCCGCUGUCGGc- -3'
miRNA:   3'- -GGCGGAGC-GAGac--UGGCGAUAGCUca -5'
23283 5' -56.4 NC_005259.1 + 24870 1.09 0.001218
Target:  5'- cCCGCCUCGCUCUGACCGCUAUCGAGUc -3'
miRNA:   3'- -GGCGGAGCGAGACUGGCGAUAGCUCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.