miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23285 3' -54.9 NC_005259.1 + 19553 0.66 0.768293
Target:  5'- cGUAUGCCCGcAGC-CGUCGGgAcagCgCCGc -3'
miRNA:   3'- -CAUACGGGU-UCGaGUAGCCgUa--G-GGC- -5'
23285 3' -54.9 NC_005259.1 + 58907 0.66 0.758122
Target:  5'- ----cCUCGGGCUCGUCGGCgGUCuuGu -3'
miRNA:   3'- cauacGGGUUCGAGUAGCCG-UAGggC- -5'
23285 3' -54.9 NC_005259.1 + 35113 0.66 0.758122
Target:  5'- ---cGCCCGuuGGCcCggCGGUGUCCCa -3'
miRNA:   3'- cauaCGGGU--UCGaGuaGCCGUAGGGc -5'
23285 3' -54.9 NC_005259.1 + 40873 0.66 0.758122
Target:  5'- ---cGCCCAcAGCUCAcCGGCca-CCGu -3'
miRNA:   3'- cauaCGGGU-UCGAGUaGCCGuagGGC- -5'
23285 3' -54.9 NC_005259.1 + 14542 0.67 0.726885
Target:  5'- -gGUG-CCGAGUUCGUcCGGCAggCCGa -3'
miRNA:   3'- caUACgGGUUCGAGUA-GCCGUagGGC- -5'
23285 3' -54.9 NC_005259.1 + 58642 0.67 0.705572
Target:  5'- -aGUGCCCAuGCccUCG-CGGUAgCCCGg -3'
miRNA:   3'- caUACGGGUuCG--AGUaGCCGUaGGGC- -5'
23285 3' -54.9 NC_005259.1 + 32652 0.67 0.693722
Target:  5'- ---gGCCgGGGUggggaaaUCGUCGGCAUCCg- -3'
miRNA:   3'- cauaCGGgUUCG-------AGUAGCCGUAGGgc -5'
23285 3' -54.9 NC_005259.1 + 44572 0.68 0.673095
Target:  5'- ---cGCCgaccggCAGGCUCAugauguUCGGCAUgCCCGc -3'
miRNA:   3'- cauaCGG------GUUCGAGU------AGCCGUA-GGGC- -5'
23285 3' -54.9 NC_005259.1 + 55527 0.68 0.672005
Target:  5'- cUGUGCCCAcAGCgccgccUCGUUGGCGUCgaggaugCCGa -3'
miRNA:   3'- cAUACGGGU-UCG------AGUAGCCGUAG-------GGC- -5'
23285 3' -54.9 NC_005259.1 + 39359 0.68 0.651234
Target:  5'- -cGUGCCgGGcCUCGUCGGgaaCGUCCCa -3'
miRNA:   3'- caUACGGgUUcGAGUAGCC---GUAGGGc -5'
23285 3' -54.9 NC_005259.1 + 60067 0.68 0.640271
Target:  5'- ---gGCUCAGGCUCGggCGGC-UCgCCGa -3'
miRNA:   3'- cauaCGGGUUCGAGUa-GCCGuAG-GGC- -5'
23285 3' -54.9 NC_005259.1 + 66668 0.68 0.640271
Target:  5'- -gGUGCUgCGAuGCUCAUCGuGCcgCCCa -3'
miRNA:   3'- caUACGG-GUU-CGAGUAGC-CGuaGGGc -5'
23285 3' -54.9 NC_005259.1 + 56542 0.69 0.618335
Target:  5'- -gGUGUCuCGGGCUCGUCGGU--CUCGg -3'
miRNA:   3'- caUACGG-GUUCGAGUAGCCGuaGGGC- -5'
23285 3' -54.9 NC_005259.1 + 33437 0.69 0.585542
Target:  5'- ---gGCUCAAGCUCGcUCGGUGUgaCCCa -3'
miRNA:   3'- cauaCGGGUUCGAGU-AGCCGUA--GGGc -5'
23285 3' -54.9 NC_005259.1 + 17433 0.69 0.574677
Target:  5'- --cUGCCCGAGgaCAUUGGCAUUgaCGa -3'
miRNA:   3'- cauACGGGUUCgaGUAGCCGUAGg-GC- -5'
23285 3' -54.9 NC_005259.1 + 61392 0.7 0.542394
Target:  5'- ---cGCCCGAuGC-CGUCGGUGUCCUc -3'
miRNA:   3'- cauaCGGGUU-CGaGUAGCCGUAGGGc -5'
23285 3' -54.9 NC_005259.1 + 68341 0.7 0.509692
Target:  5'- ---gGCUCAgcGGCUCAUCGGgguagcuCAUCCCa -3'
miRNA:   3'- cauaCGGGU--UCGAGUAGCC-------GUAGGGc -5'
23285 3' -54.9 NC_005259.1 + 23079 0.71 0.50035
Target:  5'- ----aCCCAAGCUCGuUCGGCAgggaCCGg -3'
miRNA:   3'- cauacGGGUUCGAGU-AGCCGUag--GGC- -5'
23285 3' -54.9 NC_005259.1 + 4545 0.71 0.483933
Target:  5'- uUGUGCCCAgugcgGGCacgaggucacgccgaUCGUCGGCAcguUCCCc -3'
miRNA:   3'- cAUACGGGU-----UCG---------------AGUAGCCGU---AGGGc -5'
23285 3' -54.9 NC_005259.1 + 7312 0.71 0.469784
Target:  5'- -gGUGCCCGAGUUCAcCGcCGUCgCCGa -3'
miRNA:   3'- caUACGGGUUCGAGUaGCcGUAG-GGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.