miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23285 5' -56.3 NC_005259.1 + 60401 0.66 0.775793
Target:  5'- aGGCGAGGCccaucuCGAucugcuCGGGgGUGGCCCa -3'
miRNA:   3'- -CUGCUCUGacu---GCU------GCUCgCGCUGGG- -5'
23285 5' -56.3 NC_005259.1 + 64436 0.66 0.775793
Target:  5'- cGACGAG-CUGcCG--GGGCGCuGCCCu -3'
miRNA:   3'- -CUGCUCuGACuGCugCUCGCGcUGGG- -5'
23285 5' -56.3 NC_005259.1 + 52809 0.66 0.775793
Target:  5'- cGACGAGAUccGGCGAguuuuCGAGgGCauccucgacacgGACCCc -3'
miRNA:   3'- -CUGCUCUGa-CUGCU-----GCUCgCG------------CUGGG- -5'
23285 5' -56.3 NC_005259.1 + 31232 0.66 0.775793
Target:  5'- cGAUGAGACcauUGggcGCGGCG-GUGCcGCCCc -3'
miRNA:   3'- -CUGCUCUG---AC---UGCUGCuCGCGcUGGG- -5'
23285 5' -56.3 NC_005259.1 + 60078 0.66 0.766049
Target:  5'- gGGCGGcucgccGACUuucucGAUGGCGAGCuCGACCa -3'
miRNA:   3'- -CUGCU------CUGA-----CUGCUGCUCGcGCUGGg -5'
23285 5' -56.3 NC_005259.1 + 13770 0.66 0.765068
Target:  5'- cGACGAcguguucGAC-GGCGACGAGCagugguGCGACa- -3'
miRNA:   3'- -CUGCU-------CUGaCUGCUGCUCG------CGCUGgg -5'
23285 5' -56.3 NC_005259.1 + 47930 0.66 0.763101
Target:  5'- -cCGAGGCccuggaagccgaUGACGGCGGugccgauggccgccGCGCcGCCCg -3'
miRNA:   3'- cuGCUCUG------------ACUGCUGCU--------------CGCGcUGGG- -5'
23285 5' -56.3 NC_005259.1 + 8389 0.66 0.756178
Target:  5'- cGGCGAGAgccuCGGCGAGC-CGGgCCa -3'
miRNA:   3'- -CUGCUCUgacuGCUGCUCGcGCUgGG- -5'
23285 5' -56.3 NC_005259.1 + 43928 0.66 0.736091
Target:  5'- cGACGAcaccgcgcuacuGACagcgucGGCGAUGGGCGgGGCCg -3'
miRNA:   3'- -CUGCU------------CUGa-----CUGCUGCUCGCgCUGGg -5'
23285 5' -56.3 NC_005259.1 + 48443 0.66 0.725897
Target:  5'- cGCGAGGCa-GCGGC-AGCGCGuuCCa -3'
miRNA:   3'- cUGCUCUGacUGCUGcUCGCGCugGG- -5'
23285 5' -56.3 NC_005259.1 + 22719 0.66 0.725897
Target:  5'- cGAUGAG-CU-ACGcCGAGCGCcaGCCCg -3'
miRNA:   3'- -CUGCUCuGAcUGCuGCUCGCGc-UGGG- -5'
23285 5' -56.3 NC_005259.1 + 5559 0.67 0.715616
Target:  5'- cGugGGGuGgUGACGGCGAGaC-CGugCCg -3'
miRNA:   3'- -CugCUC-UgACUGCUGCUC-GcGCugGG- -5'
23285 5' -56.3 NC_005259.1 + 17826 0.67 0.705258
Target:  5'- aGCGAGGCcauCGACGGGUG-GGCCg -3'
miRNA:   3'- cUGCUCUGacuGCUGCUCGCgCUGGg -5'
23285 5' -56.3 NC_005259.1 + 41667 0.67 0.705258
Target:  5'- aGCGGGAuCUGcACcGCGuGCGUGGCCa -3'
miRNA:   3'- cUGCUCU-GAC-UGcUGCuCGCGCUGGg -5'
23285 5' -56.3 NC_005259.1 + 26380 0.67 0.69901
Target:  5'- uGGCGAGcCUguugcucgcgauuccGACGcCGGGCGCGGCg- -3'
miRNA:   3'- -CUGCUCuGA---------------CUGCuGCUCGCGCUGgg -5'
23285 5' -56.3 NC_005259.1 + 50965 0.67 0.694833
Target:  5'- cGCGuGGCUGucccacGCGGCGAGCG-GugUCg -3'
miRNA:   3'- cUGCuCUGAC------UGCUGCUCGCgCugGG- -5'
23285 5' -56.3 NC_005259.1 + 18389 0.67 0.673825
Target:  5'- aGCGAGGgaGACGAgcaccucgcCGAGCccGCG-CCCg -3'
miRNA:   3'- cUGCUCUgaCUGCU---------GCUCG--CGCuGGG- -5'
23285 5' -56.3 NC_005259.1 + 64249 0.67 0.673825
Target:  5'- cGACGGGAUcaACGugGuGCGCGAgCa -3'
miRNA:   3'- -CUGCUCUGacUGCugCuCGCGCUgGg -5'
23285 5' -56.3 NC_005259.1 + 35702 0.67 0.67277
Target:  5'- cGGCGAGgggucGCUGAcgagguauccgccCGACGAcccgGCGCuGCCCg -3'
miRNA:   3'- -CUGCUC-----UGACU-------------GCUGCU----CGCGcUGGG- -5'
23285 5' -56.3 NC_005259.1 + 3102 0.68 0.663261
Target:  5'- cGAUGAG-CgGGCGGCcauuGCGCGGCaCCg -3'
miRNA:   3'- -CUGCUCuGaCUGCUGcu--CGCGCUG-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.