miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23286 3' -56.6 NC_005259.1 + 42744 0.66 0.678813
Target:  5'- uGUGCUugaGCagGCGguucuCGAUCUGCUCGGCGg -3'
miRNA:   3'- -CACGA---CGa-CGC-----GCUAGAUGGGCUGUa -5'
23286 3' -56.6 NC_005259.1 + 8352 0.67 0.613272
Target:  5'- -cGCUGCUGC-CGGUaucGCUCGGCGg -3'
miRNA:   3'- caCGACGACGcGCUAga-UGGGCUGUa -5'
23286 3' -56.6 NC_005259.1 + 46749 0.67 0.580588
Target:  5'- -cGCgaugGCUGCGcCGAcacCUGCgCCGACAg -3'
miRNA:   3'- caCGa---CGACGC-GCUa--GAUG-GGCUGUa -5'
23286 3' -56.6 NC_005259.1 + 42672 0.67 0.579504
Target:  5'- -gGCUGCUGUugGCGAUCUcgACCCcguugagGGCGa -3'
miRNA:   3'- caCGACGACG--CGCUAGA--UGGG-------CUGUa -5'
23286 3' -56.6 NC_005259.1 + 929 0.67 0.569767
Target:  5'- cUGCUGCUGCGCGAcagcggaaaagUCgggcaGCUCGcGCAa -3'
miRNA:   3'- cACGACGACGCGCU-----------AGa----UGGGC-UGUa -5'
23286 3' -56.6 NC_005259.1 + 26829 0.67 0.569767
Target:  5'- gGUGgUGCcgGgGCGGUCUGCUCGgGCAg -3'
miRNA:   3'- -CACgACGa-CgCGCUAGAUGGGC-UGUa -5'
23286 3' -56.6 NC_005259.1 + 4913 0.68 0.563298
Target:  5'- -aGCUGCUuugccguagggcaccGCGUGAUCguccgGCCCGAa-- -3'
miRNA:   3'- caCGACGA---------------CGCGCUAGa----UGGGCUgua -5'
23286 3' -56.6 NC_005259.1 + 13467 0.69 0.495829
Target:  5'- -cGCUGgUGCucacCGcgCUGCCCGACGa -3'
miRNA:   3'- caCGACgACGc---GCuaGAUGGGCUGUa -5'
23286 3' -56.6 NC_005259.1 + 66032 0.69 0.485604
Target:  5'- cGUGUUGC-GCGCGA---GCUCGACGUa -3'
miRNA:   3'- -CACGACGaCGCGCUagaUGGGCUGUA- -5'
23286 3' -56.6 NC_005259.1 + 4180 0.72 0.302413
Target:  5'- -cGCUGCUGCGCGAgaccaaccgcaaGCUCGACAc -3'
miRNA:   3'- caCGACGACGCGCUaga---------UGGGCUGUa -5'
23286 3' -56.6 NC_005259.1 + 24301 1.06 0.001323
Target:  5'- gGUGCUGCUGCGCGAUCUACCCGACAUg -3'
miRNA:   3'- -CACGACGACGCGCUAGAUGGGCUGUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.