miRNA display CGI


Results 21 - 40 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23286 5' -61.7 NC_005259.1 + 46042 0.68 0.326592
Target:  5'- -uGCGUGaccucguagccgaUGGCCUugagcugcucaagcACCGCCGGG-GCg -3'
miRNA:   3'- agUGCGCg------------ACCGGA--------------UGGCGGCCCaCG- -5'
23286 5' -61.7 NC_005259.1 + 11018 0.68 0.324344
Target:  5'- -gACGCGCcgaGGCaggaguUCGCCGGGUGg -3'
miRNA:   3'- agUGCGCGa--CCGgau---GGCGGCCCACg -5'
23286 5' -61.7 NC_005259.1 + 8898 0.68 0.324344
Target:  5'- gUCACGCuC-GGCCUGCUGaCGGGccGCg -3'
miRNA:   3'- -AGUGCGcGaCCGGAUGGCgGCCCa-CG- -5'
23286 5' -61.7 NC_005259.1 + 16499 0.69 0.305345
Target:  5'- cCGCGCGCaUGGCCgagagcgaGgCGCUgcgagcgucgcucaaGGGUGCg -3'
miRNA:   3'- aGUGCGCG-ACCGGa-------UgGCGG---------------CCCACG- -5'
23286 5' -61.7 NC_005259.1 + 60235 0.7 0.27516
Target:  5'- -aGCuCGCUGGCacgCUugCGUgCGGGUGCa -3'
miRNA:   3'- agUGcGCGACCG---GAugGCG-GCCCACG- -5'
23286 5' -61.7 NC_005259.1 + 48601 0.7 0.27516
Target:  5'- gUCGaGCGCgGGCgCUACCGCCG--UGCg -3'
miRNA:   3'- -AGUgCGCGaCCG-GAUGGCGGCccACG- -5'
23286 5' -61.7 NC_005259.1 + 39512 0.7 0.268642
Target:  5'- cCGCGcCGCUGGCC-ACCaGuCCGGcccaacGUGCg -3'
miRNA:   3'- aGUGC-GCGACCGGaUGG-C-GGCC------CACG- -5'
23286 5' -61.7 NC_005259.1 + 27856 0.7 0.268642
Target:  5'- gUCGCGCGCcGuaCgACCGCCcucuuGGGUGUg -3'
miRNA:   3'- -AGUGCGCGaCcgGaUGGCGG-----CCCACG- -5'
23286 5' -61.7 NC_005259.1 + 67972 0.7 0.25536
Target:  5'- gCGCGCGCagcggcgUGGCC-ACCGCCGcGaGCg -3'
miRNA:   3'- aGUGCGCG-------ACCGGaUGGCGGCcCaCG- -5'
23286 5' -61.7 NC_005259.1 + 46957 0.7 0.253507
Target:  5'- cCGCGUugagcuuGUUGGCCacGCCGCCgaugaucgggccgaGGGUGCg -3'
miRNA:   3'- aGUGCG-------CGACCGGa-UGGCGG--------------CCCACG- -5'
23286 5' -61.7 NC_005259.1 + 5409 0.7 0.249834
Target:  5'- aUCAccCGCGCUGGCCgccaCGUCGaGGUcuGCg -3'
miRNA:   3'- -AGU--GCGCGACCGGaug-GCGGC-CCA--CG- -5'
23286 5' -61.7 NC_005259.1 + 14073 0.7 0.237909
Target:  5'- gCACgGCGgUGGCCUACgugCGCagcgaggucgaGGGUGCg -3'
miRNA:   3'- aGUG-CGCgACCGGAUG---GCGg----------CCCACG- -5'
23286 5' -61.7 NC_005259.1 + 14745 0.71 0.226464
Target:  5'- gUACGCGCUGGCCgg--GCCGGuGauccUGCa -3'
miRNA:   3'- aGUGCGCGACCGGauggCGGCC-C----ACG- -5'
23286 5' -61.7 NC_005259.1 + 9517 0.71 0.220918
Target:  5'- gUCGCGCGCgucGaCC-GCCGCCGGGUc- -3'
miRNA:   3'- -AGUGCGCGac-C-GGaUGGCGGCCCAcg -5'
23286 5' -61.7 NC_005259.1 + 33902 0.71 0.220918
Target:  5'- cCGCGCGacgGGCCgagACCGgCCacGGUGCg -3'
miRNA:   3'- aGUGCGCga-CCGGa--UGGC-GGc-CCACG- -5'
23286 5' -61.7 NC_005259.1 + 28029 0.71 0.219823
Target:  5'- gCGCGCGUUGGCCagccacggcuugggaUcgaucugcgaccccuGCCGCCacacggugGGGUGCa -3'
miRNA:   3'- aGUGCGCGACCGG---------------A---------------UGGCGG--------CCCACG- -5'
23286 5' -61.7 NC_005259.1 + 2148 0.73 0.171609
Target:  5'- gCACgGUGCUGGCCagcggcgucgaGCCGCCGGuUGCc -3'
miRNA:   3'- aGUG-CGCGACCGGa----------UGGCGGCCcACG- -5'
23286 5' -61.7 NC_005259.1 + 19706 0.73 0.163007
Target:  5'- cUCGCaCGUUGG-CUGCCGCCGaGGUGa -3'
miRNA:   3'- -AGUGcGCGACCgGAUGGCGGC-CCACg -5'
23286 5' -61.7 NC_005259.1 + 55901 0.73 0.162588
Target:  5'- gUCGCGCcggggucGCUGGCCagACCGCUGGucUGCu -3'
miRNA:   3'- -AGUGCG-------CGACCGGa-UGGCGGCCc-ACG- -5'
23286 5' -61.7 NC_005259.1 + 9805 0.74 0.143181
Target:  5'- cUCGCGCcaCUaccGCCcgcACCGCCGGGUGCg -3'
miRNA:   3'- -AGUGCGc-GAc--CGGa--UGGCGGCCCACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.