miRNA display CGI


Results 1 - 20 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23287 3' -57.7 NC_005259.1 + 18262 0.66 0.689062
Target:  5'- cGCCGcgCCugaaccugagacgacCUCGACGCCcgacgaGCCGCCg -3'
miRNA:   3'- -UGGCa-GGc--------------GAGCUGCGGuua---CGGUGG- -5'
23287 3' -57.7 NC_005259.1 + 15973 0.66 0.688015
Target:  5'- cGCCGcCCaGUUCGGucgagugaucacCGCCGGUGgCCGCa -3'
miRNA:   3'- -UGGCaGG-CGAGCU------------GCGGUUAC-GGUGg -5'
23287 3' -57.7 NC_005259.1 + 14343 0.66 0.688015
Target:  5'- uGCgGgCCGC-CGACGCCAucaacucacGUGUCuCCg -3'
miRNA:   3'- -UGgCaGGCGaGCUGCGGU---------UACGGuGG- -5'
23287 3' -57.7 NC_005259.1 + 28331 0.66 0.686967
Target:  5'- uGCCGUCCuugGCggcgaaaUCGAgGCCAcgGUGCUggcuGCCc -3'
miRNA:   3'- -UGGCAGG---CG-------AGCUgCGGU--UACGG----UGG- -5'
23287 3' -57.7 NC_005259.1 + 28209 0.66 0.677517
Target:  5'- -gUGUCCGUa-GACGgUcGUGCCGCCa -3'
miRNA:   3'- ugGCAGGCGagCUGCgGuUACGGUGG- -5'
23287 3' -57.7 NC_005259.1 + 65408 0.66 0.677517
Target:  5'- cACCGUCaUGCUCacgGugGCCAAgcgaugGCCugagcucgcACCu -3'
miRNA:   3'- -UGGCAG-GCGAG---CugCGGUUa-----CGG---------UGG- -5'
23287 3' -57.7 NC_005259.1 + 34677 0.66 0.677517
Target:  5'- gGuuGcCCGCaUUGGCGCUgcggauGAUGCCgACCa -3'
miRNA:   3'- -UggCaGGCG-AGCUGCGG------UUACGG-UGG- -5'
23287 3' -57.7 NC_005259.1 + 37738 0.66 0.677517
Target:  5'- cGCCGacgagCUGCUCGAUGaCCAGcgcgGUgGCCc -3'
miRNA:   3'- -UGGCa----GGCGAGCUGC-GGUUa---CGgUGG- -5'
23287 3' -57.7 NC_005259.1 + 37213 0.66 0.677517
Target:  5'- cACCG-CCGC-CGcCGCCGGggcgcugGCCcguGCCg -3'
miRNA:   3'- -UGGCaGGCGaGCuGCGGUUa------CGG---UGG- -5'
23287 3' -57.7 NC_005259.1 + 27520 0.66 0.671199
Target:  5'- -gUGUCCGCacacgccgUCGAgGCCccacggcgggauguuGcgGCCACCg -3'
miRNA:   3'- ugGCAGGCG--------AGCUgCGG---------------UuaCGGUGG- -5'
23287 3' -57.7 NC_005259.1 + 66025 0.66 0.668035
Target:  5'- gGCCG-CacguguugcgcgcgaGCUCGACGUaGAcGCCGCCg -3'
miRNA:   3'- -UGGCaGg--------------CGAGCUGCGgUUaCGGUGG- -5'
23287 3' -57.7 NC_005259.1 + 41390 0.66 0.668035
Target:  5'- gGCCGguacccauggcgcgCCGCUCGGggUGCCcacgaugugcacggGCCGCCa -3'
miRNA:   3'- -UGGCa-------------GGCGAGCU--GCGGuua-----------CGGUGG- -5'
23287 3' -57.7 NC_005259.1 + 5417 0.66 0.66698
Target:  5'- cGCUGgCCGCcacgUCGaggucuGCGCCcgcUGCCGCCg -3'
miRNA:   3'- -UGGCaGGCG----AGC------UGCGGuu-ACGGUGG- -5'
23287 3' -57.7 NC_005259.1 + 42956 0.66 0.66698
Target:  5'- gGCCG-CCGUugUCGAacgggaUGCCGGggaucaucguUGCCGCCc -3'
miRNA:   3'- -UGGCaGGCG--AGCU------GCGGUU----------ACGGUGG- -5'
23287 3' -57.7 NC_005259.1 + 26840 0.66 0.66698
Target:  5'- gGCgGUCUGCUCGG-GCagGAUGCCgaGCUg -3'
miRNA:   3'- -UGgCAGGCGAGCUgCGg-UUACGG--UGG- -5'
23287 3' -57.7 NC_005259.1 + 736 0.66 0.66698
Target:  5'- cACCGgCgGUgccuaCGcCGCCGGUGCCuACCg -3'
miRNA:   3'- -UGGCaGgCGa----GCuGCGGUUACGG-UGG- -5'
23287 3' -57.7 NC_005259.1 + 39973 0.66 0.656412
Target:  5'- -gCGaCUGCUCGACcaccucgacggGCUGAUcGCCGCCg -3'
miRNA:   3'- ugGCaGGCGAGCUG-----------CGGUUA-CGGUGG- -5'
23287 3' -57.7 NC_005259.1 + 1361 0.66 0.656412
Target:  5'- uACUGggCCGCUCGcCGC----GCCGCCc -3'
miRNA:   3'- -UGGCa-GGCGAGCuGCGguuaCGGUGG- -5'
23287 3' -57.7 NC_005259.1 + 17351 0.66 0.656412
Target:  5'- cGCCGUCgaggucggcgGCUCGGCGCUggucguggucGAcugcgacacUGCCGCCc -3'
miRNA:   3'- -UGGCAGg---------CGAGCUGCGG----------UU---------ACGGUGG- -5'
23287 3' -57.7 NC_005259.1 + 33239 0.66 0.655354
Target:  5'- cACCGcguacgugccagaUCUGCcCGcaGCGCCGAUGCUGCg -3'
miRNA:   3'- -UGGC-------------AGGCGaGC--UGCGGUUACGGUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.