miRNA display CGI


Results 1 - 20 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23287 5' -56.4 NC_005259.1 + 45320 0.66 0.728168
Target:  5'- -aGGCCGCCgccgaacugcGUGGccuGCGCCGccuGGGCCGc -3'
miRNA:   3'- caCCGGUGG----------UACU---CGUGGU---UCUGGCc -5'
23287 5' -56.4 NC_005259.1 + 52403 0.66 0.728168
Target:  5'- -gGGCCAUCgagguGUGGGCGCUc-GACuCGGg -3'
miRNA:   3'- caCCGGUGG-----UACUCGUGGuuCUG-GCC- -5'
23287 5' -56.4 NC_005259.1 + 42937 0.66 0.72713
Target:  5'- -aGGCCcucGCCGUGGGCgagGCCGccguugucgaacgGGauGCCGGg -3'
miRNA:   3'- caCCGG---UGGUACUCG---UGGU-------------UC--UGGCC- -5'
23287 5' -56.4 NC_005259.1 + 28354 0.66 0.72713
Target:  5'- -aGGCCACgGUGcuGGCugccccaccucggGCCGAaACCGGa -3'
miRNA:   3'- caCCGGUGgUAC--UCG-------------UGGUUcUGGCC- -5'
23287 5' -56.4 NC_005259.1 + 67985 0.66 0.721924
Target:  5'- cGUGGCCACCGccgcgagcgucgacuUGcccuccugcggcGGCAUCGAGAUCu- -3'
miRNA:   3'- -CACCGGUGGU---------------AC------------UCGUGGUUCUGGcc -5'
23287 5' -56.4 NC_005259.1 + 50400 0.66 0.717745
Target:  5'- -cGGCuCGCCGaGcGCGCCGGugccuuGACCGGc -3'
miRNA:   3'- caCCG-GUGGUaCuCGUGGUU------CUGGCC- -5'
23287 5' -56.4 NC_005259.1 + 45503 0.66 0.717745
Target:  5'- uUGGUCGCUGUGGcCACCGc-GCCGGu -3'
miRNA:   3'- cACCGGUGGUACUcGUGGUucUGGCC- -5'
23287 5' -56.4 NC_005259.1 + 63657 0.66 0.717745
Target:  5'- cUGGCCgggacGCCGgacaccucGGGCACCGGcgcGCCGGg -3'
miRNA:   3'- cACCGG-----UGGUa-------CUCGUGGUUc--UGGCC- -5'
23287 5' -56.4 NC_005259.1 + 28982 0.66 0.717745
Target:  5'- -aGGCCGC---GAGCGCCcgcuacggccacGAGAUCGGc -3'
miRNA:   3'- caCCGGUGguaCUCGUGG------------UUCUGGCC- -5'
23287 5' -56.4 NC_005259.1 + 14980 0.66 0.717745
Target:  5'- -aGGCCGCCGgguacaAGaCACagcAGGCCGGg -3'
miRNA:   3'- caCCGGUGGUac----UC-GUGgu-UCUGGCC- -5'
23287 5' -56.4 NC_005259.1 + 36048 0.66 0.717745
Target:  5'- -aGGCCACCcgcgcGAGCACCAccuGCUGu -3'
miRNA:   3'- caCCGGUGGua---CUCGUGGUuc-UGGCc -5'
23287 5' -56.4 NC_005259.1 + 61837 0.66 0.717745
Target:  5'- uGUuGCUGCCAggggUGAGCACCucGGCCa- -3'
miRNA:   3'- -CAcCGGUGGU----ACUCGUGGuuCUGGcc -5'
23287 5' -56.4 NC_005259.1 + 29482 0.66 0.70724
Target:  5'- aUGGaCCGCCGUGAcuaucaGCACauCGAGACaGGa -3'
miRNA:   3'- cACC-GGUGGUACU------CGUG--GUUCUGgCC- -5'
23287 5' -56.4 NC_005259.1 + 34845 0.66 0.70724
Target:  5'- -aGGCCGCCcaguucucaggcGUGuccucgucGGUGCCG-GACCGGg -3'
miRNA:   3'- caCCGGUGG------------UAC--------UCGUGGUuCUGGCC- -5'
23287 5' -56.4 NC_005259.1 + 36236 0.66 0.70724
Target:  5'- uUGGCCAgCGcGAGCGCCugcgucGGcagcgccacGCCGGa -3'
miRNA:   3'- cACCGGUgGUaCUCGUGGu-----UC---------UGGCC- -5'
23287 5' -56.4 NC_005259.1 + 8666 0.66 0.70724
Target:  5'- -gGGCUGCCAcgcGGGCAaCGGGGCCGc -3'
miRNA:   3'- caCCGGUGGUa--CUCGUgGUUCUGGCc -5'
23287 5' -56.4 NC_005259.1 + 41687 0.66 0.696665
Target:  5'- cGUGGCCACCGcgcacacaggcaUGcAGcCGCCGcauACCGGc -3'
miRNA:   3'- -CACCGGUGGU------------AC-UC-GUGGUuc-UGGCC- -5'
23287 5' -56.4 NC_005259.1 + 27972 0.66 0.696665
Target:  5'- cGUGGCCAauguuccucCCuUGGGUggugcggguGCCGGGGCgGGg -3'
miRNA:   3'- -CACCGGU---------GGuACUCG---------UGGUUCUGgCC- -5'
23287 5' -56.4 NC_005259.1 + 18063 0.66 0.686029
Target:  5'- cGUGGaUCuCCGacaaGGGCACCAAGACCc- -3'
miRNA:   3'- -CACC-GGuGGUa---CUCGUGGUUCUGGcc -5'
23287 5' -56.4 NC_005259.1 + 43042 0.66 0.686029
Target:  5'- -aGGCCGCC--GAGCAgCGAaccGACgGGg -3'
miRNA:   3'- caCCGGUGGuaCUCGUgGUU---CUGgCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.