miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23288 3' -62.6 NC_005259.1 + 3877 0.68 0.327368
Target:  5'- cUCGaGCCCAcCCCGCAGC-GCGACa--- -3'
miRNA:   3'- -GGC-CGGGU-GGGCGUCGgCGUUGgaca -5'
23288 3' -62.6 NC_005259.1 + 5516 0.66 0.417294
Target:  5'- gCGcGCCgCGCCCGCaAGCUGUGGCUg-- -3'
miRNA:   3'- gGC-CGG-GUGGGCG-UCGGCGUUGGaca -5'
23288 3' -62.6 NC_005259.1 + 5732 0.67 0.350408
Target:  5'- gCGGCCauuCUCGCGGCCaagcggcgaGCuGCCUGa -3'
miRNA:   3'- gGCCGGgu-GGGCGUCGG---------CGuUGGACa -5'
23288 3' -62.6 NC_005259.1 + 8861 0.67 0.342602
Target:  5'- gCGuGCCCG-CCGCcuGCCGCAcccacgccGCCUGa -3'
miRNA:   3'- gGC-CGGGUgGGCGu-CGGCGU--------UGGACa -5'
23288 3' -62.6 NC_005259.1 + 11442 0.68 0.298424
Target:  5'- uUGGgCCGCUCGCuGCCGCcgguGCCUa- -3'
miRNA:   3'- gGCCgGGUGGGCGuCGGCGu---UGGAca -5'
23288 3' -62.6 NC_005259.1 + 12166 0.69 0.246568
Target:  5'- aCGGCaCCGCCCuCGGUCG-AACCUGc -3'
miRNA:   3'- gGCCG-GGUGGGcGUCGGCgUUGGACa -5'
23288 3' -62.6 NC_005259.1 + 12216 0.71 0.192009
Target:  5'- aCCGGCgcaCCGCCCGCuGGCCGgGcaauggucacaccGCCUGc -3'
miRNA:   3'- -GGCCG---GGUGGGCG-UCGGCgU-------------UGGACa -5'
23288 3' -62.6 NC_005259.1 + 13108 0.74 0.11479
Target:  5'- cCCGGCCCGCUCgGCGGCUaCGACCa-- -3'
miRNA:   3'- -GGCCGGGUGGG-CGUCGGcGUUGGaca -5'
23288 3' -62.6 NC_005259.1 + 15983 0.69 0.271502
Target:  5'- uUCGGUcgagugaucaCCGCCgGUGGCCGCAuCCUGc -3'
miRNA:   3'- -GGCCG----------GGUGGgCGUCGGCGUuGGACa -5'
23288 3' -62.6 NC_005259.1 + 19651 0.71 0.197395
Target:  5'- aCCGGCaCCGCCUcggGCAGCCGCuACa--- -3'
miRNA:   3'- -GGCCG-GGUGGG---CGUCGGCGuUGgaca -5'
23288 3' -62.6 NC_005259.1 + 20998 0.66 0.417294
Target:  5'- -gGGCCUACUCG-GGCgGCGACcCUGa -3'
miRNA:   3'- ggCCGGGUGGGCgUCGgCGUUG-GACa -5'
23288 3' -62.6 NC_005259.1 + 22845 1.09 0.000291
Target:  5'- cCCGGCCCACCCGCAGCCGCAACCUGUa -3'
miRNA:   3'- -GGCCGGGUGGGCGUCGGCGUUGGACA- -5'
23288 3' -62.6 NC_005259.1 + 23769 0.69 0.278045
Target:  5'- aCCGGCCCcacagcCCCGCAGaCGCAcgaaACCc-- -3'
miRNA:   3'- -GGCCGGGu-----GGGCGUCgGCGU----UGGaca -5'
23288 3' -62.6 NC_005259.1 + 25174 0.68 0.319942
Target:  5'- -gGGUCCgACCCGUAcGCCGCcGCCg-- -3'
miRNA:   3'- ggCCGGG-UGGGCGU-CGGCGuUGGaca -5'
23288 3' -62.6 NC_005259.1 + 26133 0.66 0.408514
Target:  5'- gCCGGUCCgACgCCGCcgaGGCCgaGCAGCCcGa -3'
miRNA:   3'- -GGCCGGG-UG-GGCG---UCGG--CGUUGGaCa -5'
23288 3' -62.6 NC_005259.1 + 32916 0.69 0.257546
Target:  5'- cCCGGCCCGCUcgggCGCGGCgGUAucgucaccauccCCUGUc -3'
miRNA:   3'- -GGCCGGGUGG----GCGUCGgCGUu-----------GGACA- -5'
23288 3' -62.6 NC_005259.1 + 33083 0.66 0.408514
Target:  5'- gCUGG-CCACCUGUAGguaggcCCGCGagcguGCCUGUa -3'
miRNA:   3'- -GGCCgGGUGGGCGUC------GGCGU-----UGGACA- -5'
23288 3' -62.6 NC_005259.1 + 33672 0.67 0.35834
Target:  5'- cCCGGCCCACCCu--GU-GCGACCa-- -3'
miRNA:   3'- -GGCCGGGUGGGcguCGgCGUUGGaca -5'
23288 3' -62.6 NC_005259.1 + 35453 0.69 0.271502
Target:  5'- uCCGcGCCCACCgGCAccGCCaGCAccGCCcgGUa -3'
miRNA:   3'- -GGC-CGGGUGGgCGU--CGG-CGU--UGGa-CA- -5'
23288 3' -62.6 NC_005259.1 + 35867 0.72 0.156999
Target:  5'- gCCGcGUCCA-CCGCAGCCGCcGCCg-- -3'
miRNA:   3'- -GGC-CGGGUgGGCGUCGGCGuUGGaca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.