miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23289 3' -53 NC_005259.1 + 18334 0.66 0.864056
Target:  5'- cGGUGCGUucguggucgacgcCGaCGGCGACAuguggcacaugcccgAGGGCGGu- -3'
miRNA:   3'- -CUACGCA-------------GC-GCUGCUGU---------------UCCCGUUuu -5'
23289 3' -53 NC_005259.1 + 62991 0.66 0.861575
Target:  5'- --cGCGUCGacuCGAUGGCAuuGGCAGGc -3'
miRNA:   3'- cuaCGCAGC---GCUGCUGUucCCGUUUu -5'
23289 3' -53 NC_005259.1 + 18106 0.66 0.861575
Target:  5'- --aGcCGUCGCGcucauCGACuacGAGGGCAAc- -3'
miRNA:   3'- cuaC-GCAGCGCu----GCUG---UUCCCGUUuu -5'
23289 3' -53 NC_005259.1 + 55310 0.66 0.84448
Target:  5'- --cGCGU-GCGACGACcacAGGGGUGGu- -3'
miRNA:   3'- cuaCGCAgCGCUGCUG---UUCCCGUUuu -5'
23289 3' -53 NC_005259.1 + 20631 0.67 0.8162
Target:  5'- cGAUGCGuUCGUucgcgacacguucGGCGGCAccGGGGCcGAGg -3'
miRNA:   3'- -CUACGC-AGCG-------------CUGCUGU--UCCCGuUUU- -5'
23289 3' -53 NC_005259.1 + 6524 0.67 0.797902
Target:  5'- cGUGCG-CGCGAcaacCGGCcucGGGGCGAGc -3'
miRNA:   3'- cUACGCaGCGCU----GCUGu--UCCCGUUUu -5'
23289 3' -53 NC_005259.1 + 25494 0.67 0.788009
Target:  5'- --gGCGcUCGCG-CGugA-GGGCAAAAa -3'
miRNA:   3'- cuaCGC-AGCGCuGCugUuCCCGUUUU- -5'
23289 3' -53 NC_005259.1 + 38452 0.67 0.777949
Target:  5'- aAUGCcgUGCGAgGGCAccgAGGGCAGAAc -3'
miRNA:   3'- cUACGcaGCGCUgCUGU---UCCCGUUUU- -5'
23289 3' -53 NC_005259.1 + 19211 0.68 0.767733
Target:  5'- uGGUGCGg-GCGGCGACGuGGGaCAc-- -3'
miRNA:   3'- -CUACGCagCGCUGCUGUuCCC-GUuuu -5'
23289 3' -53 NC_005259.1 + 14159 0.68 0.736273
Target:  5'- --cGCGUCGUGugGAUcucgccGGGCGGGu -3'
miRNA:   3'- cuaCGCAGCGCugCUGuu----CCCGUUUu -5'
23289 3' -53 NC_005259.1 + 59303 0.7 0.603886
Target:  5'- --cGCuGUCGUGGCGGCAGcGGCGAGc -3'
miRNA:   3'- cuaCG-CAGCGCUGCUGUUcCCGUUUu -5'
23289 3' -53 NC_005259.1 + 202 0.72 0.526008
Target:  5'- --cGCGUggCGCGACGGCAAgcaguucGGGCAGu- -3'
miRNA:   3'- cuaCGCA--GCGCUGCUGUU-------CCCGUUuu -5'
23289 3' -53 NC_005259.1 + 22359 1.07 0.002727
Target:  5'- cGAUGCGUCGCGACGACAAGGGCAAAAg -3'
miRNA:   3'- -CUACGCAGCGCUGCUGUUCCCGUUUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.