miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23289 5' -53.6 NC_005259.1 + 20182 0.66 0.861419
Target:  5'- cGCCUCGGCuGACGaGAUCGccGGuugcAAGa -3'
miRNA:   3'- cCGGAGCCG-CUGCaCUAGC--UCu---UUCa -5'
23289 5' -53.6 NC_005259.1 + 67909 0.66 0.861419
Target:  5'- gGGUCUCGGCGAgGUcaagcgcguaGGUCGcGAGGa- -3'
miRNA:   3'- -CCGGAGCCGCUgCA----------CUAGCuCUUUca -5'
23289 5' -53.6 NC_005259.1 + 17599 0.66 0.853212
Target:  5'- -aCCUCGGCgcgauGACGUGGggcggCGAGGAcGGUu -3'
miRNA:   3'- ccGGAGCCG-----CUGCACUa----GCUCUU-UCA- -5'
23289 5' -53.6 NC_005259.1 + 55052 0.67 0.836129
Target:  5'- uGCCUCGGUGGCagucUGcgCGAGAu--- -3'
miRNA:   3'- cCGGAGCCGCUGc---ACuaGCUCUuuca -5'
23289 5' -53.6 NC_005259.1 + 36159 0.67 0.82727
Target:  5'- uGGCCaCGGUGACGaccuugccgaGGUCGAGAGc-- -3'
miRNA:   3'- -CCGGaGCCGCUGCa---------CUAGCUCUUuca -5'
23289 5' -53.6 NC_005259.1 + 33319 0.67 0.82727
Target:  5'- cGCCgUCGGCGGucacgcggaaGUGAUCGGGGucGa -3'
miRNA:   3'- cCGG-AGCCGCUg---------CACUAGCUCUuuCa -5'
23289 5' -53.6 NC_005259.1 + 4999 0.68 0.780166
Target:  5'- gGGCaCUaCGGCaAgGUGGUCGAGAucGa -3'
miRNA:   3'- -CCG-GA-GCCGcUgCACUAGCUCUuuCa -5'
23289 5' -53.6 NC_005259.1 + 64811 0.68 0.770254
Target:  5'- cGGCCUCGGCGGCaaUGAgCGuGu-GGUg -3'
miRNA:   3'- -CCGGAGCCGCUGc-ACUaGCuCuuUCA- -5'
23289 5' -53.6 NC_005259.1 + 8449 0.68 0.750025
Target:  5'- uGGUCUCGGU---GUGGUCGAGguAGa -3'
miRNA:   3'- -CCGGAGCCGcugCACUAGCUCuuUCa -5'
23289 5' -53.6 NC_005259.1 + 54505 0.69 0.708253
Target:  5'- gGGCauggCGGCGAUGUGGgguggCGGGucGAGUa -3'
miRNA:   3'- -CCGga--GCCGCUGCACUa----GCUCu-UUCA- -5'
23289 5' -53.6 NC_005259.1 + 5553 0.69 0.686887
Target:  5'- aGGCCgcgUGGgGugGUGAcggCGAGAccGUg -3'
miRNA:   3'- -CCGGa--GCCgCugCACUa--GCUCUuuCA- -5'
23289 5' -53.6 NC_005259.1 + 29406 0.72 0.557178
Target:  5'- gGGCCUCGGCGAgcuCGUGcgCGcacacAGGAuGUa -3'
miRNA:   3'- -CCGGAGCCGCU---GCACuaGC-----UCUUuCA- -5'
23289 5' -53.6 NC_005259.1 + 34024 0.8 0.204416
Target:  5'- cGGCCUCGGCGGCGUGcGUCGGc----- -3'
miRNA:   3'- -CCGGAGCCGCUGCAC-UAGCUcuuuca -5'
23289 5' -53.6 NC_005259.1 + 22393 1.1 0.002023
Target:  5'- cGGCCUCGGCGACGUGAUCGAGAAAGUc -3'
miRNA:   3'- -CCGGAGCCGCUGCACUAGCUCUUUCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.