miRNA display CGI


Results 1 - 20 of 22 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23291 5' -53.8 NC_005259.1 + 30774 0.66 0.866848
Target:  5'- cGGUgGCaccGCUGCCGUUguuCGcGUACCGc -3'
miRNA:   3'- -CCAgCG---UGACGGCAGuu-GCcUAUGGU- -5'
23291 5' -53.8 NC_005259.1 + 3300 0.66 0.866848
Target:  5'- cGGUCccucggcgaGCGCUG-CGUCGACGuGAgcGCCGg -3'
miRNA:   3'- -CCAG---------CGUGACgGCAGUUGC-CUa-UGGU- -5'
23291 5' -53.8 NC_005259.1 + 53259 0.66 0.841978
Target:  5'- cGUCGcCGCcGCUGUCGcCGG-UGCCGc -3'
miRNA:   3'- cCAGC-GUGaCGGCAGUuGCCuAUGGU- -5'
23291 5' -53.8 NC_005259.1 + 6448 0.66 0.841978
Target:  5'- cGUCGCGCUGaUCGgCAGCGucgccGGUGCCc -3'
miRNA:   3'- cCAGCGUGAC-GGCaGUUGC-----CUAUGGu -5'
23291 5' -53.8 NC_005259.1 + 68789 0.66 0.833246
Target:  5'- aGGUCGUAC-GCCGg-GGCGGugucgGUGCCc -3'
miRNA:   3'- -CCAGCGUGaCGGCagUUGCC-----UAUGGu -5'
23291 5' -53.8 NC_005259.1 + 44939 0.67 0.821586
Target:  5'- gGGUCcauggcaccagcggGCAgUGCgGUCAucgGGAUGCCGa -3'
miRNA:   3'- -CCAG--------------CGUgACGgCAGUug-CCUAUGGU- -5'
23291 5' -53.8 NC_005259.1 + 19703 0.67 0.805846
Target:  5'- aGGcUCGCacguugGCUGCCGccgaggugaUCGACGGggACUAg -3'
miRNA:   3'- -CC-AGCG------UGACGGC---------AGUUGCCuaUGGU- -5'
23291 5' -53.8 NC_005259.1 + 9150 0.68 0.746528
Target:  5'- -cUCGUGC--CCGUCGACGGcAUGCCGg -3'
miRNA:   3'- ccAGCGUGacGGCAGUUGCC-UAUGGU- -5'
23291 5' -53.8 NC_005259.1 + 41319 0.68 0.745498
Target:  5'- aGGUCgaccucgaaaaggGCGgUGCCGUC---GGAUACCAc -3'
miRNA:   3'- -CCAG-------------CGUgACGGCAGuugCCUAUGGU- -5'
23291 5' -53.8 NC_005259.1 + 27854 0.68 0.725731
Target:  5'- aGGUCGCGC-GCCGUaCGACcgcccucuuGGGUgugcACCAc -3'
miRNA:   3'- -CCAGCGUGaCGGCA-GUUG---------CCUA----UGGU- -5'
23291 5' -53.8 NC_005259.1 + 8948 0.68 0.725731
Target:  5'- cGGUgGgCGC-GCCGUgGACGGGcACCGu -3'
miRNA:   3'- -CCAgC-GUGaCGGCAgUUGCCUaUGGU- -5'
23291 5' -53.8 NC_005259.1 + 40611 0.69 0.672334
Target:  5'- aGGUCugGCUGCCGUCGcgcACGaacucGAUGCCGu -3'
miRNA:   3'- -CCAGcgUGACGGCAGU---UGC-----CUAUGGU- -5'
23291 5' -53.8 NC_005259.1 + 42196 0.7 0.6615
Target:  5'- --cUGCGC-GCCGUCGcgAUGGAUGCCc -3'
miRNA:   3'- ccaGCGUGaCGGCAGU--UGCCUAUGGu -5'
23291 5' -53.8 NC_005259.1 + 48622 0.7 0.6615
Target:  5'- cGUgCGCACUGCC-UCGccgagACGGGcUGCCAg -3'
miRNA:   3'- cCA-GCGUGACGGcAGU-----UGCCU-AUGGU- -5'
23291 5' -53.8 NC_005259.1 + 20124 0.7 0.65064
Target:  5'- aGGcCGCacugGCUGCCGUCGcgaugACGGcaGCCGg -3'
miRNA:   3'- -CCaGCG----UGACGGCAGU-----UGCCuaUGGU- -5'
23291 5' -53.8 NC_005259.1 + 8346 0.7 0.639764
Target:  5'- cGGUCaCGCUGCUGccgguaucgcUCGGCGGcgGCCu -3'
miRNA:   3'- -CCAGcGUGACGGC----------AGUUGCCuaUGGu -5'
23291 5' -53.8 NC_005259.1 + 26278 0.71 0.585467
Target:  5'- uGUCGcCGgUGCCGcccUCGACGGGUACgGg -3'
miRNA:   3'- cCAGC-GUgACGGC---AGUUGCCUAUGgU- -5'
23291 5' -53.8 NC_005259.1 + 8661 0.71 0.553274
Target:  5'- uGGUCGgGCUGCCacgcgggCAACGGGgccGCCu -3'
miRNA:   3'- -CCAGCgUGACGGca-----GUUGCCUa--UGGu -5'
23291 5' -53.8 NC_005259.1 + 15526 0.72 0.52163
Target:  5'- aGGUCaGCACUcaggccGCCGUCAcugGCcGGUGCCAc -3'
miRNA:   3'- -CCAG-CGUGA------CGGCAGU---UGcCUAUGGU- -5'
23291 5' -53.8 NC_005259.1 + 47571 0.72 0.500929
Target:  5'- --gCGCGCUGCUGUCccucGGCGGuguUGCCGa -3'
miRNA:   3'- ccaGCGUGACGGCAG----UUGCCu--AUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.