miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23292 5' -62.5 NC_005259.1 + 66053 0.66 0.429991
Target:  5'- gUAGACGccGCCGUgggCCUGCUGUagCCACAc -3'
miRNA:   3'- aGUCUGC--UGGCG---GGACGGCGg-GGUGU- -5'
23292 5' -62.5 NC_005259.1 + 45146 0.66 0.421032
Target:  5'- aUCuGcUGAUCGCUCagGCCGCCCUugGc -3'
miRNA:   3'- -AGuCuGCUGGCGGGa-CGGCGGGGugU- -5'
23292 5' -62.5 NC_005259.1 + 36616 0.66 0.421032
Target:  5'- --cGACccuuGCCGCCCgcGCCGC-CCGCAa -3'
miRNA:   3'- aguCUGc---UGGCGGGa-CGGCGgGGUGU- -5'
23292 5' -62.5 NC_005259.1 + 68276 0.66 0.403456
Target:  5'- gUAGGC-ACCGUCCU--CGCCCCAUAc -3'
miRNA:   3'- aGUCUGcUGGCGGGAcgGCGGGGUGU- -5'
23292 5' -62.5 NC_005259.1 + 44501 0.66 0.40259
Target:  5'- gUAGACcgGGgUGCCCUggccacccacgccGCCGCCCgGCAg -3'
miRNA:   3'- aGUCUG--CUgGCGGGA-------------CGGCGGGgUGU- -5'
23292 5' -62.5 NC_005259.1 + 45415 0.66 0.386352
Target:  5'- gCuGAUGGCCGCCgCcGCUGCCUCGu- -3'
miRNA:   3'- aGuCUGCUGGCGG-GaCGGCGGGGUgu -5'
23292 5' -62.5 NC_005259.1 + 45006 0.66 0.386352
Target:  5'- --cGcCGACCGCCgggGCCGCgCCGCc -3'
miRNA:   3'- aguCuGCUGGCGGga-CGGCGgGGUGu -5'
23292 5' -62.5 NC_005259.1 + 17383 0.66 0.386352
Target:  5'- -uGGuCGACUGCgacaCUGCCGCCCagcUACAg -3'
miRNA:   3'- agUCuGCUGGCGg---GACGGCGGG---GUGU- -5'
23292 5' -62.5 NC_005259.1 + 37417 0.66 0.386352
Target:  5'- --uGACG-CCGCCC-GCCGUgCCAUu -3'
miRNA:   3'- aguCUGCuGGCGGGaCGGCGgGGUGu -5'
23292 5' -62.5 NC_005259.1 + 66766 0.67 0.35361
Target:  5'- cCAGuCGACCG-CCUGCUGCUCgaACGu -3'
miRNA:   3'- aGUCuGCUGGCgGGACGGCGGGg-UGU- -5'
23292 5' -62.5 NC_005259.1 + 30362 0.67 0.35361
Target:  5'- -uGGACGccgauCUGCCC-GCUGCCCgGCGa -3'
miRNA:   3'- agUCUGCu----GGCGGGaCGGCGGGgUGU- -5'
23292 5' -62.5 NC_005259.1 + 48608 0.67 0.345737
Target:  5'- gCGGGCGcuACCGCCgUGCgcacUGCCUCGCc -3'
miRNA:   3'- aGUCUGC--UGGCGGgACG----GCGGGGUGu -5'
23292 5' -62.5 NC_005259.1 + 37382 0.67 0.345737
Target:  5'- cUCGG-C-ACCGCCC-GCCGCgCCGCc -3'
miRNA:   3'- -AGUCuGcUGGCGGGaCGGCGgGGUGu -5'
23292 5' -62.5 NC_005259.1 + 23877 0.68 0.322878
Target:  5'- -uGGAUGcgcuauccgcuGCCGCCCgagccGCCGCgCCCGCc -3'
miRNA:   3'- agUCUGC-----------UGGCGGGa----CGGCG-GGGUGu -5'
23292 5' -62.5 NC_005259.1 + 47961 0.68 0.322878
Target:  5'- --cGAUGGCCGCCgC-GCCGC-CCGCGa -3'
miRNA:   3'- aguCUGCUGGCGG-GaCGGCGgGGUGU- -5'
23292 5' -62.5 NC_005259.1 + 4362 0.68 0.308276
Target:  5'- cCGGACGGCaCGCCCg--UGCCCUGCu -3'
miRNA:   3'- aGUCUGCUG-GCGGGacgGCGGGGUGu -5'
23292 5' -62.5 NC_005259.1 + 23743 0.68 0.301166
Target:  5'- -gGGACGGCgaccccgaCGCCCcGCagaccgGCCCCACAg -3'
miRNA:   3'- agUCUGCUG--------GCGGGaCGg-----CGGGGUGU- -5'
23292 5' -62.5 NC_005259.1 + 24119 0.68 0.294183
Target:  5'- cCGGGCGgggacuacACCGCC--GCCGCCCUGCu -3'
miRNA:   3'- aGUCUGC--------UGGCGGgaCGGCGGGGUGu -5'
23292 5' -62.5 NC_005259.1 + 4905 0.68 0.294183
Target:  5'- aUCGGAUGAgCUGCUUUGCCGUagggcaCCGCGu -3'
miRNA:   3'- -AGUCUGCU-GGCGGGACGGCGg-----GGUGU- -5'
23292 5' -62.5 NC_005259.1 + 50001 0.68 0.294183
Target:  5'- gCGGACGGCUGCCCUcgugcacgggcGCUGCguaaUCCGCu -3'
miRNA:   3'- aGUCUGCUGGCGGGA-----------CGGCG----GGGUGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.