miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23293 3' -53 NC_005259.1 + 46749 0.66 0.909997
Target:  5'- -cGCGAUggCUGCGcCGacaccugCGCCGACa -3'
miRNA:   3'- cuCGCUGuaGAUGCaGCa------GUGGCUGc -5'
23293 3' -53 NC_005259.1 + 50985 0.66 0.903452
Target:  5'- cGAGCGGUGUCga----GUCACCGGCGa -3'
miRNA:   3'- -CUCGCUGUAGaugcagCAGUGGCUGC- -5'
23293 3' -53 NC_005259.1 + 20072 0.66 0.896643
Target:  5'- uGGCGGuCGUCaccACGUCGaaacCACCGACc -3'
miRNA:   3'- cUCGCU-GUAGa--UGCAGCa---GUGGCUGc -5'
23293 3' -53 NC_005259.1 + 40766 0.66 0.896643
Target:  5'- uGGuCGAgCAUCUGC-UCGUCGgCGAUGa -3'
miRNA:   3'- cUC-GCU-GUAGAUGcAGCAGUgGCUGC- -5'
23293 3' -53 NC_005259.1 + 28756 0.67 0.850494
Target:  5'- cGAGCGugAgau-CGUCGccggUGCCGACGa -3'
miRNA:   3'- -CUCGCugUagauGCAGCa---GUGGCUGC- -5'
23293 3' -53 NC_005259.1 + 34502 0.67 0.850494
Target:  5'- -cGCGACG---ACGaUGUCGCCGACa -3'
miRNA:   3'- cuCGCUGUagaUGCaGCAGUGGCUGc -5'
23293 3' -53 NC_005259.1 + 47611 0.67 0.849652
Target:  5'- cGGCGAgGcugagguUCU-UGUCGUCGCCGAgGg -3'
miRNA:   3'- cUCGCUgU-------AGAuGCAGCAGUGGCUgC- -5'
23293 3' -53 NC_005259.1 + 58465 0.67 0.841978
Target:  5'- -cGCGGCcaccagUGCGUggcUGUCGCCGACGa -3'
miRNA:   3'- cuCGCUGuag---AUGCA---GCAGUGGCUGC- -5'
23293 3' -53 NC_005259.1 + 3109 0.67 0.833245
Target:  5'- cGGGCGGCcaUUGCG-CGgCACCGugGg -3'
miRNA:   3'- -CUCGCUGuaGAUGCaGCaGUGGCugC- -5'
23293 3' -53 NC_005259.1 + 37834 0.67 0.833245
Target:  5'- cGGGCcACAcCUGCGUCGa-GCCGAUGu -3'
miRNA:   3'- -CUCGcUGUaGAUGCAGCagUGGCUGC- -5'
23293 3' -53 NC_005259.1 + 65115 0.68 0.81517
Target:  5'- cAGUG-CGUCacCGUCGgcgCACCGGCGg -3'
miRNA:   3'- cUCGCuGUAGauGCAGCa--GUGGCUGC- -5'
23293 3' -53 NC_005259.1 + 20409 0.68 0.81517
Target:  5'- aGGGCaucGAgGUCUACccgGUCACCGACGc -3'
miRNA:   3'- -CUCG---CUgUAGAUGcagCAGUGGCUGC- -5'
23293 3' -53 NC_005259.1 + 36411 0.68 0.796342
Target:  5'- uGAGCGcCucaagggucaugGUCUGCGcagCGUCGCCGAgGu -3'
miRNA:   3'- -CUCGCuG------------UAGAUGCa--GCAGUGGCUgC- -5'
23293 3' -53 NC_005259.1 + 27059 0.69 0.776845
Target:  5'- uGAGCGACgGUC-ACGgCGacaUCGCCGACa -3'
miRNA:   3'- -CUCGCUG-UAGaUGCaGC---AGUGGCUGc -5'
23293 3' -53 NC_005259.1 + 56726 0.69 0.73618
Target:  5'- cGAGCG-CGUCgACGUaucCGcCACCGAUGa -3'
miRNA:   3'- -CUCGCuGUAGaUGCA---GCaGUGGCUGC- -5'
23293 3' -53 NC_005259.1 + 37064 0.7 0.715189
Target:  5'- cGGCGGCgguGUCcACGUCcacgCACCGGCGg -3'
miRNA:   3'- cUCGCUG---UAGaUGCAGca--GUGGCUGC- -5'
23293 3' -53 NC_005259.1 + 14041 0.71 0.62888
Target:  5'- cGAGCGGCAgc-GCaUCGUCGgCGACGa -3'
miRNA:   3'- -CUCGCUGUagaUGcAGCAGUgGCUGC- -5'
23293 3' -53 NC_005259.1 + 49733 0.72 0.596284
Target:  5'- cGGGCGGCGagagCUGC-UCGUCAgUGACGg -3'
miRNA:   3'- -CUCGCUGUa---GAUGcAGCAGUgGCUGC- -5'
23293 3' -53 NC_005259.1 + 21150 1.1 0.002369
Target:  5'- uGAGCGACAUCUACGUCGUCACCGACGg -3'
miRNA:   3'- -CUCGCUGUAGAUGCAGCAGUGGCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.