miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23293 5' -57.1 NC_005259.1 + 8634 0.66 0.664233
Target:  5'- ----cCGGCgagaaugGCGGGCACgAGGCUGUg -3'
miRNA:   3'- caguaGCCG-------CGCUCGUGgUUCGACGu -5'
23293 5' -57.1 NC_005259.1 + 40656 0.66 0.664233
Target:  5'- aGUCAugcUCGccgagcaGCGCGAGCGCCuuGgUGCu -3'
miRNA:   3'- -CAGU---AGC-------CGCGCUCGUGGuuCgACGu -5'
23293 5' -57.1 NC_005259.1 + 48598 0.66 0.643623
Target:  5'- cUUGUCGaGCGCGGGCGCUAccGCcgUGCGc -3'
miRNA:   3'- cAGUAGC-CGCGCUCGUGGUu-CG--ACGU- -5'
23293 5' -57.1 NC_005259.1 + 9514 0.66 0.642537
Target:  5'- cUCGUCGcGCGCGucgaccgccgccgGGuCACCGgagAGCUGCc -3'
miRNA:   3'- cAGUAGC-CGCGC-------------UC-GUGGU---UCGACGu -5'
23293 5' -57.1 NC_005259.1 + 43790 0.67 0.600191
Target:  5'- -gCAUgagCaGCGCGGGCACCGAGUccuUGCc -3'
miRNA:   3'- caGUA---GcCGCGCUCGUGGUUCG---ACGu -5'
23293 5' -57.1 NC_005259.1 + 61921 0.67 0.582905
Target:  5'- cGUCGUCGGCagcucggucucucgcGCGGGUGCCgGGGCcaccGCAg -3'
miRNA:   3'- -CAGUAGCCG---------------CGCUCGUGG-UUCGa---CGU- -5'
23293 5' -57.1 NC_005259.1 + 38292 0.67 0.565721
Target:  5'- uGUCAUCGGCGCugaucgucggaccGAucugugucaugguGC-CCGAGUUGCGc -3'
miRNA:   3'- -CAGUAGCCGCG-------------CU-------------CGuGGUUCGACGU- -5'
23293 5' -57.1 NC_005259.1 + 14054 0.67 0.557178
Target:  5'- aUCGUCGGCGaCGAG-ACC-AGCacgGCGg -3'
miRNA:   3'- cAGUAGCCGC-GCUCgUGGuUCGa--CGU- -5'
23293 5' -57.1 NC_005259.1 + 59138 0.68 0.525501
Target:  5'- cGUCGagcUCGGCaGCG-GUGCCGgggAGCUGCu -3'
miRNA:   3'- -CAGU---AGCCG-CGCuCGUGGU---UCGACGu -5'
23293 5' -57.1 NC_005259.1 + 66248 0.68 0.525501
Target:  5'- -cCAUCGacgcaGCGCGGcccGCGCCGGGCgGCGg -3'
miRNA:   3'- caGUAGC-----CGCGCU---CGUGGUUCGaCGU- -5'
23293 5' -57.1 NC_005259.1 + 60296 0.68 0.493511
Target:  5'- cGUCGUCGGUGCG-GCcacggacggcgaaACCGGGCgUGUu -3'
miRNA:   3'- -CAGUAGCCGCGCuCG-------------UGGUUCG-ACGu -5'
23293 5' -57.1 NC_005259.1 + 9200 0.69 0.48439
Target:  5'- cGUCAUaCGGgGCcggaucGAGCACC--GCUGCGg -3'
miRNA:   3'- -CAGUA-GCCgCG------CUCGUGGuuCGACGU- -5'
23293 5' -57.1 NC_005259.1 + 16682 0.69 0.464417
Target:  5'- uGUgGUCGGCGauccuGGGCACCGAGgUGa- -3'
miRNA:   3'- -CAgUAGCCGCg----CUCGUGGUUCgACgu -5'
23293 5' -57.1 NC_005259.1 + 55022 0.69 0.464417
Target:  5'- gGUCGucUCGGCaCGGGCuGCCGAGgUGCu -3'
miRNA:   3'- -CAGU--AGCCGcGCUCG-UGGUUCgACGu -5'
23293 5' -57.1 NC_005259.1 + 36051 0.69 0.444882
Target:  5'- -cCAcCcGCGCGAGCACCAccuGCUGUg -3'
miRNA:   3'- caGUaGcCGCGCUCGUGGUu--CGACGu -5'
23293 5' -57.1 NC_005259.1 + 13455 0.7 0.425816
Target:  5'- -cCGUCGGCGCGGcGCuggugcucACCGcGCUGCc -3'
miRNA:   3'- caGUAGCCGCGCU-CG--------UGGUuCGACGu -5'
23293 5' -57.1 NC_005259.1 + 20506 0.7 0.425816
Target:  5'- cUCAUCGGCGacgguguccCGAGCACgGGugcGCUGCc -3'
miRNA:   3'- cAGUAGCCGC---------GCUCGUGgUU---CGACGu -5'
23293 5' -57.1 NC_005259.1 + 24052 0.7 0.424875
Target:  5'- cGUCGUCGGCGCGGugcucaaucucguGCACCGcgAGaucaccgGCAg -3'
miRNA:   3'- -CAGUAGCCGCGCU-------------CGUGGU--UCga-----CGU- -5'
23293 5' -57.1 NC_005259.1 + 67130 0.7 0.407244
Target:  5'- --gGUCGuGCGUGAGCACC--GCUGUg -3'
miRNA:   3'- cagUAGC-CGCGCUCGUGGuuCGACGu -5'
23293 5' -57.1 NC_005259.1 + 27173 0.7 0.398151
Target:  5'- -cCGUCGGCGaUGAGCA---GGCUGCGa -3'
miRNA:   3'- caGUAGCCGC-GCUCGUgguUCGACGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.