Results 1 - 20 of 27 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23293 | 5' | -57.1 | NC_005259.1 | + | 8634 | 0.66 | 0.664233 |
Target: 5'- ----cCGGCgagaaugGCGGGCACgAGGCUGUg -3' miRNA: 3'- caguaGCCG-------CGCUCGUGgUUCGACGu -5' |
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23293 | 5' | -57.1 | NC_005259.1 | + | 36051 | 0.69 | 0.444882 |
Target: 5'- -cCAcCcGCGCGAGCACCAccuGCUGUg -3' miRNA: 3'- caGUaGcCGCGCUCGUGGUu--CGACGu -5' |
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23293 | 5' | -57.1 | NC_005259.1 | + | 16682 | 0.69 | 0.464417 |
Target: 5'- uGUgGUCGGCGauccuGGGCACCGAGgUGa- -3' miRNA: 3'- -CAgUAGCCGCg----CUCGUGGUUCgACgu -5' |
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23293 | 5' | -57.1 | NC_005259.1 | + | 55022 | 0.69 | 0.464417 |
Target: 5'- gGUCGucUCGGCaCGGGCuGCCGAGgUGCu -3' miRNA: 3'- -CAGU--AGCCGcGCUCG-UGGUUCgACGu -5' |
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23293 | 5' | -57.1 | NC_005259.1 | + | 9200 | 0.69 | 0.48439 |
Target: 5'- cGUCAUaCGGgGCcggaucGAGCACC--GCUGCGg -3' miRNA: 3'- -CAGUA-GCCgCG------CUCGUGGuuCGACGU- -5' |
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23293 | 5' | -57.1 | NC_005259.1 | + | 60296 | 0.68 | 0.493511 |
Target: 5'- cGUCGUCGGUGCG-GCcacggacggcgaaACCGGGCgUGUu -3' miRNA: 3'- -CAGUAGCCGCGCuCG-------------UGGUUCG-ACGu -5' |
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23293 | 5' | -57.1 | NC_005259.1 | + | 66248 | 0.68 | 0.525501 |
Target: 5'- -cCAUCGacgcaGCGCGGcccGCGCCGGGCgGCGg -3' miRNA: 3'- caGUAGC-----CGCGCU---CGUGGUUCGaCGU- -5' |
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23293 | 5' | -57.1 | NC_005259.1 | + | 59138 | 0.68 | 0.525501 |
Target: 5'- cGUCGagcUCGGCaGCG-GUGCCGgggAGCUGCu -3' miRNA: 3'- -CAGU---AGCCG-CGCuCGUGGU---UCGACGu -5' |
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23293 | 5' | -57.1 | NC_005259.1 | + | 14054 | 0.67 | 0.557178 |
Target: 5'- aUCGUCGGCGaCGAG-ACC-AGCacgGCGg -3' miRNA: 3'- cAGUAGCCGC-GCUCgUGGuUCGa--CGU- -5' |
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23293 | 5' | -57.1 | NC_005259.1 | + | 13455 | 0.7 | 0.425816 |
Target: 5'- -cCGUCGGCGCGGcGCuggugcucACCGcGCUGCc -3' miRNA: 3'- caGUAGCCGCGCU-CG--------UGGUuCGACGu -5' |
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23293 | 5' | -57.1 | NC_005259.1 | + | 20506 | 0.7 | 0.425816 |
Target: 5'- cUCAUCGGCGacgguguccCGAGCACgGGugcGCUGCc -3' miRNA: 3'- cAGUAGCCGC---------GCUCGUGgUU---CGACGu -5' |
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23293 | 5' | -57.1 | NC_005259.1 | + | 24052 | 0.7 | 0.424875 |
Target: 5'- cGUCGUCGGCGCGGugcucaaucucguGCACCGcgAGaucaccgGCAg -3' miRNA: 3'- -CAGUAGCCGCGCU-------------CGUGGU--UCga-----CGU- -5' |
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23293 | 5' | -57.1 | NC_005259.1 | + | 3319 | 0.72 | 0.292361 |
Target: 5'- -gCGUCGaCGUGAGCGCCGGGCaGCu -3' miRNA: 3'- caGUAGCcGCGCUCGUGGUUCGaCGu -5' |
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23293 | 5' | -57.1 | NC_005259.1 | + | 3187 | 0.72 | 0.299661 |
Target: 5'- gGUCGUCGGUGCGcGCACCAcgauguggGGCcucaaGCAc -3' miRNA: 3'- -CAGUAGCCGCGCuCGUGGU--------UCGa----CGU- -5' |
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23293 | 5' | -57.1 | NC_005259.1 | + | 49862 | 0.71 | 0.371666 |
Target: 5'- aUCGUUGGUcacgacGCGuuGCGCCGAGUUGCGc -3' miRNA: 3'- cAGUAGCCG------CGCu-CGUGGUUCGACGU- -5' |
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23293 | 5' | -57.1 | NC_005259.1 | + | 34414 | 0.7 | 0.3883 |
Target: 5'- uGUCAUUGGUccacGCGAGaCGCCccucgauGAGCUGCc -3' miRNA: 3'- -CAGUAGCCG----CGCUC-GUGG-------UUCGACGu -5' |
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23293 | 5' | -57.1 | NC_005259.1 | + | 7193 | 0.7 | 0.389189 |
Target: 5'- ----cCGGCcuGCGGacGCACCGGGCUGCGg -3' miRNA: 3'- caguaGCCG--CGCU--CGUGGUUCGACGU- -5' |
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23293 | 5' | -57.1 | NC_005259.1 | + | 42805 | 0.7 | 0.389189 |
Target: 5'- --aAUCGGCGCGuGCACUGugguauuGCUGCc -3' miRNA: 3'- cagUAGCCGCGCuCGUGGUu------CGACGu -5' |
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23293 | 5' | -57.1 | NC_005259.1 | + | 27173 | 0.7 | 0.398151 |
Target: 5'- -cCGUCGGCGaUGAGCA---GGCUGCGa -3' miRNA: 3'- caGUAGCCGC-GCUCGUgguUCGACGU- -5' |
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23293 | 5' | -57.1 | NC_005259.1 | + | 67130 | 0.7 | 0.407244 |
Target: 5'- --gGUCGuGCGUGAGCACC--GCUGUg -3' miRNA: 3'- cagUAGC-CGCGCUCGUGGuuCGACGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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