miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23294 3' -61.7 NC_005259.1 + 21699 0.66 0.474597
Target:  5'- -cGUUUCGAGgACGGGUCaGaCgaccGCCCu -3'
miRNA:   3'- caCAGGGCUCgUGCCCAGcC-Ga---CGGG- -5'
23294 3' -61.7 NC_005259.1 + 9818 0.66 0.465124
Target:  5'- -cG-CCCGcaccGC-CGGGUgCGGCgcugGCCCa -3'
miRNA:   3'- caCaGGGCu---CGuGCCCA-GCCGa---CGGG- -5'
23294 3' -61.7 NC_005259.1 + 56378 0.66 0.450177
Target:  5'- -cGUCgCGGGC-CGcGUCGGCugaucgucucgauggUGCCCg -3'
miRNA:   3'- caCAGgGCUCGuGCcCAGCCG---------------ACGGG- -5'
23294 3' -61.7 NC_005259.1 + 50234 0.66 0.428261
Target:  5'- ---aUCCGAGCGCGGGcgCGGaucgugGCCa -3'
miRNA:   3'- cacaGGGCUCGUGCCCa-GCCga----CGGg -5'
23294 3' -61.7 NC_005259.1 + 37235 0.67 0.410487
Target:  5'- cUGgCCCGuGC-CGGaUUGGCUGCCg -3'
miRNA:   3'- cACaGGGCuCGuGCCcAGCCGACGGg -5'
23294 3' -61.7 NC_005259.1 + 60514 0.67 0.389775
Target:  5'- uUGUCguagugcgccauggCCGGGC-CGGGacgcagccgcucgUCGGCaUGCCCg -3'
miRNA:   3'- cACAG--------------GGCUCGuGCCC-------------AGCCG-ACGGG- -5'
23294 3' -61.7 NC_005259.1 + 769 0.67 0.384705
Target:  5'- -cGUCCaccGCGcCGaGG-CGGCUGCCCu -3'
miRNA:   3'- caCAGGgcuCGU-GC-CCaGCCGACGGG- -5'
23294 3' -61.7 NC_005259.1 + 68776 0.68 0.3714
Target:  5'- gGUGUaCuuGAGCaggucguacgccgggGCGGuGUCGG-UGCCCg -3'
miRNA:   3'- -CACA-GggCUCG---------------UGCC-CAGCCgACGGG- -5'
23294 3' -61.7 NC_005259.1 + 68719 0.68 0.368123
Target:  5'- gGUG-CCCGAGaaCugGGGUCGccGCuUGCCg -3'
miRNA:   3'- -CACaGGGCUC--GugCCCAGC--CG-ACGGg -5'
23294 3' -61.7 NC_005259.1 + 29881 0.68 0.363245
Target:  5'- -cG-CCCGAugucgaggucggcaaGCACaaGGGgUGGCUGCCCg -3'
miRNA:   3'- caCaGGGCU---------------CGUG--CCCaGCCGACGGG- -5'
23294 3' -61.7 NC_005259.1 + 59408 0.68 0.344185
Target:  5'- cGUGaCCuCGcGCAUGGcGUCGGCgGCCa -3'
miRNA:   3'- -CACaGG-GCuCGUGCC-CAGCCGaCGGg -5'
23294 3' -61.7 NC_005259.1 + 56542 0.68 0.335693
Target:  5'- gGUGUCUCGGGCucgucggucuCGGGUucggugaucgucgCGGCUGCg- -3'
miRNA:   3'- -CACAGGGCUCGu---------GCCCA-------------GCCGACGgg -5'
23294 3' -61.7 NC_005259.1 + 6372 0.69 0.297636
Target:  5'- uUGUCgCCGGGCGCGauGGUCaacgucauuuucgaGGCggUGCCCu -3'
miRNA:   3'- cACAG-GGCUCGUGC--CCAG--------------CCG--ACGGG- -5'
23294 3' -61.7 NC_005259.1 + 12410 0.69 0.292776
Target:  5'- -gGUCuCCGAGCGCcGGUCGuCUGUCUu -3'
miRNA:   3'- caCAG-GGCUCGUGcCCAGCcGACGGG- -5'
23294 3' -61.7 NC_005259.1 + 53522 0.7 0.272651
Target:  5'- cGUGgCCagcGGCACGGGcUCGG-UGCCCg -3'
miRNA:   3'- -CACaGGgc-UCGUGCCC-AGCCgACGGG- -5'
23294 3' -61.7 NC_005259.1 + 4286 0.7 0.253651
Target:  5'- cUG-CCaCGAGCACGGacCGGCgGCCCu -3'
miRNA:   3'- cACaGG-GCUCGUGCCcaGCCGaCGGG- -5'
23294 3' -61.7 NC_005259.1 + 44394 0.72 0.188345
Target:  5'- aUGUCgCCGAGCACG--UCGG-UGCCCg -3'
miRNA:   3'- cACAG-GGCUCGUGCccAGCCgACGGG- -5'
23294 3' -61.7 NC_005259.1 + 23323 0.72 0.188345
Target:  5'- gGUGUCgCCGAGCcggauuacauCGGGcucgaGGCUGCCUg -3'
miRNA:   3'- -CACAG-GGCUCGu---------GCCCag---CCGACGGG- -5'
23294 3' -61.7 NC_005259.1 + 20518 0.94 0.004276
Target:  5'- gGUGUCCCGAGCACGGGUgcGCUGCCCg -3'
miRNA:   3'- -CACAGGGCUCGUGCCCAgcCGACGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.