miRNA display CGI


Results 1 - 20 of 22 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23294 5' -56.5 NC_005259.1 + 28949 0.66 0.713744
Target:  5'- -cGAUCcuGCGCCGcAUCgCCGAGGUCGg -3'
miRNA:   3'- acCUAGu-CGUGGC-UGG-GGCUCUAGUa -5'
23294 5' -56.5 NC_005259.1 + 42515 0.66 0.713744
Target:  5'- gUGGccagCAGCcguCCGGCCCCGAuGggCAc -3'
miRNA:   3'- -ACCua--GUCGu--GGCUGGGGCU-CuaGUa -5'
23294 5' -56.5 NC_005259.1 + 27481 0.66 0.713744
Target:  5'- gGGGUCGGUguggccACCGccccacGCgCCGAGGUCGa -3'
miRNA:   3'- aCCUAGUCG------UGGC------UGgGGCUCUAGUa -5'
23294 5' -56.5 NC_005259.1 + 31394 0.66 0.713744
Target:  5'- cGGugacAUCggAGCACagcGCCCCGAGGUCGc -3'
miRNA:   3'- aCC----UAG--UCGUGgc-UGGGGCUCUAGUa -5'
23294 5' -56.5 NC_005259.1 + 31074 0.66 0.703151
Target:  5'- cGGGUCGGCGagGuuCCCGAGcgCGUc -3'
miRNA:   3'- aCCUAGUCGUggCugGGGCUCuaGUA- -5'
23294 5' -56.5 NC_005259.1 + 27880 0.66 0.703151
Target:  5'- uUGGGUguGCACCacGAUccaCCUGGGGUCGc -3'
miRNA:   3'- -ACCUAguCGUGG--CUG---GGGCUCUAGUa -5'
23294 5' -56.5 NC_005259.1 + 43463 0.66 0.703151
Target:  5'- aGGuGUCguugAGCaACCGGCCCUGAGcGUCGa -3'
miRNA:   3'- aCC-UAG----UCG-UGGCUGGGGCUC-UAGUa -5'
23294 5' -56.5 NC_005259.1 + 8061 0.66 0.681774
Target:  5'- -cGGUCGcCGCCGACaUCGAGAUCGUg -3'
miRNA:   3'- acCUAGUcGUGGCUGgGGCUCUAGUA- -5'
23294 5' -56.5 NC_005259.1 + 7856 0.66 0.671011
Target:  5'- cGGA-CcGCGCCGACCCCGGu----- -3'
miRNA:   3'- aCCUaGuCGUGGCUGGGGCUcuagua -5'
23294 5' -56.5 NC_005259.1 + 16448 0.66 0.660213
Target:  5'- cGGGcaccgUCGGCAUCGguACCCCGccgcAGAUCGc -3'
miRNA:   3'- aCCU-----AGUCGUGGC--UGGGGC----UCUAGUa -5'
23294 5' -56.5 NC_005259.1 + 17840 0.67 0.606036
Target:  5'- cGGGUgGGCcgagGCC-ACCCCGuGGUCAg -3'
miRNA:   3'- aCCUAgUCG----UGGcUGGGGCuCUAGUa -5'
23294 5' -56.5 NC_005259.1 + 38238 0.68 0.58876
Target:  5'- gUGGAUCAGCGauggugccgcCuuugaacgauaccgaCGACCCCGAGGUgAg -3'
miRNA:   3'- -ACCUAGUCGU----------G---------------GCUGGGGCUCUAgUa -5'
23294 5' -56.5 NC_005259.1 + 9342 0.68 0.584454
Target:  5'- cGaGGUCGGCACCGAUgaCCGucuguAGGUCGUa -3'
miRNA:   3'- aC-CUAGUCGUGGCUGg-GGC-----UCUAGUA- -5'
23294 5' -56.5 NC_005259.1 + 22534 0.68 0.55239
Target:  5'- cGGugauuucCAGCAguCCGACCucgCCGAGGUCAUg -3'
miRNA:   3'- aCCua-----GUCGU--GGCUGG---GGCUCUAGUA- -5'
23294 5' -56.5 NC_005259.1 + 18171 0.69 0.530261
Target:  5'- cGGAUCuGGCAgucgaggUCGACCCCGAcAUCGc -3'
miRNA:   3'- aCCUAG-UCGU-------GGCUGGGGCUcUAGUa -5'
23294 5' -56.5 NC_005259.1 + 41837 0.69 0.510524
Target:  5'- uUGGAUCGGC-UCGACCUCGAcGGUg-- -3'
miRNA:   3'- -ACCUAGUCGuGGCUGGGGCU-CUAgua -5'
23294 5' -56.5 NC_005259.1 + 49113 0.69 0.490087
Target:  5'- gGGAUCucaAGaCGCUGAUCaCCGGGGUCAa -3'
miRNA:   3'- aCCUAG---UC-GUGGCUGG-GGCUCUAGUa -5'
23294 5' -56.5 NC_005259.1 + 24278 0.7 0.440778
Target:  5'- cUGGA--AGCGCuCGACCUCGGGAUgGUg -3'
miRNA:   3'- -ACCUagUCGUG-GCUGGGGCUCUAgUA- -5'
23294 5' -56.5 NC_005259.1 + 63696 0.71 0.412579
Target:  5'- gGGAUCuGCGCCuGCCCagcgGGGAUCGg -3'
miRNA:   3'- aCCUAGuCGUGGcUGGGg---CUCUAGUa -5'
23294 5' -56.5 NC_005259.1 + 49594 0.75 0.23065
Target:  5'- gGGGUCAGCACCucGACCUCGGGcagcucAUCAUc -3'
miRNA:   3'- aCCUAGUCGUGG--CUGGGGCUC------UAGUA- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.