miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23295 5' -55 NC_005259.1 + 58219 0.65 0.789846
Target:  5'- aGGGUCAgUGGCCucGAGcuCGGGCUCGGu -3'
miRNA:   3'- -UUCAGU-ACUGG--CUCcuGCCCGAGUUc -5'
23295 5' -55 NC_005259.1 + 60047 0.66 0.779997
Target:  5'- -uGUCGU--UCGGGGucuucuCGGGCUCAGGc -3'
miRNA:   3'- uuCAGUAcuGGCUCCu-----GCCCGAGUUC- -5'
23295 5' -55 NC_005259.1 + 34872 0.66 0.779004
Target:  5'- -cGUCGgugccgGACCGgggugccucgggcAGGACGGGCcgcUCGGGc -3'
miRNA:   3'- uuCAGUa-----CUGGC-------------UCCUGCCCG---AGUUC- -5'
23295 5' -55 NC_005259.1 + 3248 0.66 0.769997
Target:  5'- -cGUCAUGA-CGAGGuCGGcauccuGCUCGGGu -3'
miRNA:   3'- uuCAGUACUgGCUCCuGCC------CGAGUUC- -5'
23295 5' -55 NC_005259.1 + 43965 0.66 0.769997
Target:  5'- gGGGcCGccgccUGACCGAGGGCGGuGC-CGAu -3'
miRNA:   3'- -UUCaGU-----ACUGGCUCCUGCC-CGaGUUc -5'
23295 5' -55 NC_005259.1 + 32356 0.66 0.759855
Target:  5'- gAGGUUgAUGACCGccguguAGGGCGGGCa---- -3'
miRNA:   3'- -UUCAG-UACUGGC------UCCUGCCCGaguuc -5'
23295 5' -55 NC_005259.1 + 4746 0.66 0.758834
Target:  5'- cGGcUCA-GGCCGgucccucGGGcCGGGCUCAAGc -3'
miRNA:   3'- uUC-AGUaCUGGC-------UCCuGCCCGAGUUC- -5'
23295 5' -55 NC_005259.1 + 10322 0.66 0.739195
Target:  5'- -cGUCAUcgGGCuCGGcGACGGGCUCGGc -3'
miRNA:   3'- uuCAGUA--CUG-GCUcCUGCCCGAGUUc -5'
23295 5' -55 NC_005259.1 + 53520 0.67 0.718106
Target:  5'- --cUCGUGGCCaGcGGcACGGGCUCGGu -3'
miRNA:   3'- uucAGUACUGG-CuCC-UGCCCGAGUUc -5'
23295 5' -55 NC_005259.1 + 23318 0.67 0.707429
Target:  5'- cGGUCgGUGucGCCGAgccGGAuuacauCGGGCUCGAGg -3'
miRNA:   3'- uUCAG-UAC--UGGCU---CCU------GCCCGAGUUC- -5'
23295 5' -55 NC_005259.1 + 23005 0.67 0.69668
Target:  5'- gAGGUC---ACCGAGGACG-GCUCGGu -3'
miRNA:   3'- -UUCAGuacUGGCUCCUGCcCGAGUUc -5'
23295 5' -55 NC_005259.1 + 35303 0.68 0.620296
Target:  5'- gAAGUagAUGACCGAGGGCGGuGUguacgCGAc -3'
miRNA:   3'- -UUCAg-UACUGGCUCCUGCC-CGa----GUUc -5'
23295 5' -55 NC_005259.1 + 24892 0.69 0.609346
Target:  5'- cGAGUCA--GCCGAGGAC-GGCgagCGGGu -3'
miRNA:   3'- -UUCAGUacUGGCUCCUGcCCGa--GUUC- -5'
23295 5' -55 NC_005259.1 + 644 0.69 0.576649
Target:  5'- -cGcCAccGCCGAGGACGuGCUCGAGg -3'
miRNA:   3'- uuCaGUacUGGCUCCUGCcCGAGUUC- -5'
23295 5' -55 NC_005259.1 + 49571 0.71 0.471682
Target:  5'- cGGUCGUGGCCaGAccggcGGGCGGGgUCAGc -3'
miRNA:   3'- uUCAGUACUGG-CU-----CCUGCCCgAGUUc -5'
23295 5' -55 NC_005259.1 + 20016 1.07 0.001799
Target:  5'- aAAGUCAUGACCGAGGACGGGCUCAAGa -3'
miRNA:   3'- -UUCAGUACUGGCUCCUGCCCGAGUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.