miRNA display CGI


Results 1 - 20 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23296 3' -65.3 NC_005259.1 + 58574 0.66 0.346894
Target:  5'- gGCC-GGAUCGCggcgCGGCuGCCGgGCCgGa -3'
miRNA:   3'- gCGGcCCUAGCG----GCUG-CGGCgCGGgU- -5'
23296 3' -65.3 NC_005259.1 + 14304 0.66 0.346133
Target:  5'- uGUCGGugcguauGGcCGCCcucGACGCCGCcGCCCGc -3'
miRNA:   3'- gCGGCC-------CUaGCGG---CUGCGGCG-CGGGU- -5'
23296 3' -65.3 NC_005259.1 + 6246 0.66 0.339337
Target:  5'- gGCgaGuGGGUCGauaucccgcaCCGcCGCCGCGCCUAc -3'
miRNA:   3'- gCGg-C-CCUAGC----------GGCuGCGGCGCGGGU- -5'
23296 3' -65.3 NC_005259.1 + 57649 0.66 0.339337
Target:  5'- cCGCCGGGuacagcaGCaCGuCGaCCGUGUCCGg -3'
miRNA:   3'- -GCGGCCCuag----CG-GCuGC-GGCGCGGGU- -5'
23296 3' -65.3 NC_005259.1 + 15849 0.66 0.339337
Target:  5'- gGCuCGGGcAUCGCCaagcuCGCCGCuCUCAu -3'
miRNA:   3'- gCG-GCCC-UAGCGGcu---GCGGCGcGGGU- -5'
23296 3' -65.3 NC_005259.1 + 8358 0.66 0.331901
Target:  5'- uGCCGGuAUCGCuCGGCGgCG-GCCUc -3'
miRNA:   3'- gCGGCCcUAGCG-GCUGCgGCgCGGGu -5'
23296 3' -65.3 NC_005259.1 + 23889 0.66 0.324585
Target:  5'- cCGCUGc---CGcCCGAgcCGCCGCGCCCGc -3'
miRNA:   3'- -GCGGCccuaGC-GGCU--GCGGCGCGGGU- -5'
23296 3' -65.3 NC_005259.1 + 46681 0.66 0.324585
Target:  5'- aGCuCGGccugaGCCGcCGCCGCGUCCc -3'
miRNA:   3'- gCG-GCCcuag-CGGCuGCGGCGCGGGu -5'
23296 3' -65.3 NC_005259.1 + 61951 0.66 0.324585
Target:  5'- uGCCGGGGccaccgcaGCCucacGCGCCGCuGCCUc -3'
miRNA:   3'- gCGGCCCUag------CGGc---UGCGGCG-CGGGu -5'
23296 3' -65.3 NC_005259.1 + 16471 0.66 0.324585
Target:  5'- cCGCCGcaGAUCGCCGucaaggGCGCaccCGCGCgCAu -3'
miRNA:   3'- -GCGGCc-CUAGCGGC------UGCG---GCGCGgGU- -5'
23296 3' -65.3 NC_005259.1 + 50085 0.66 0.324585
Target:  5'- --gCGGcagcUCGCCGAUGgUGCGCCCGa -3'
miRNA:   3'- gcgGCCcu--AGCGGCUGCgGCGCGGGU- -5'
23296 3' -65.3 NC_005259.1 + 51545 0.66 0.324585
Target:  5'- gGCCGGGcaagUGCaCGACGuuGgGgCCAa -3'
miRNA:   3'- gCGGCCCua--GCG-GCUGCggCgCgGGU- -5'
23296 3' -65.3 NC_005259.1 + 42200 0.66 0.32386
Target:  5'- gCGCCGucgcgauGGAUgccCGCCG-CGCCGcCGUCCc -3'
miRNA:   3'- -GCGGC-------CCUA---GCGGCuGCGGC-GCGGGu -5'
23296 3' -65.3 NC_005259.1 + 8820 0.66 0.32386
Target:  5'- gCGCCGGGccggugaGUUGaCG-CGCUGCGCCg- -3'
miRNA:   3'- -GCGGCCC-------UAGCgGCuGCGGCGCGGgu -5'
23296 3' -65.3 NC_005259.1 + 8947 0.66 0.32386
Target:  5'- aCGgUGGGcgCGCCGugGacgggcaCCGUGCCgGg -3'
miRNA:   3'- -GCgGCCCuaGCGGCugC-------GGCGCGGgU- -5'
23296 3' -65.3 NC_005259.1 + 19361 0.66 0.31739
Target:  5'- aCGCCGGGAUcaaggcccCGCUGAUcaCCG-GCCCc -3'
miRNA:   3'- -GCGGCCCUA--------GCGGCUGc-GGCgCGGGu -5'
23296 3' -65.3 NC_005259.1 + 26588 0.66 0.31739
Target:  5'- gCGCgaGGGGuUUGCCuugauccACGCCGCGCCgGa -3'
miRNA:   3'- -GCGg-CCCU-AGCGGc------UGCGGCGCGGgU- -5'
23296 3' -65.3 NC_005259.1 + 44503 0.66 0.310315
Target:  5'- aGaCCGGGGU-GCCcuggccacccACGCCGCcGCCCGg -3'
miRNA:   3'- gC-GGCCCUAgCGGc---------UGCGGCG-CGGGU- -5'
23296 3' -65.3 NC_005259.1 + 18465 0.66 0.310315
Target:  5'- cCGCCGG--UC-CUGA-GCCGUGCCCGa -3'
miRNA:   3'- -GCGGCCcuAGcGGCUgCGGCGCGGGU- -5'
23296 3' -65.3 NC_005259.1 + 43817 0.66 0.310315
Target:  5'- uGCCGGGcguacCGCCGGacacaggGCCGcCGCUCGc -3'
miRNA:   3'- gCGGCCCua---GCGGCUg------CGGC-GCGGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.