miRNA display CGI


Results 1 - 20 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23296 5' -55 NC_005259.1 + 23622 0.65 0.794719
Target:  5'- cGGCAGCCAgacggcucggugUGGUUUCGGCcc--GCCGa -3'
miRNA:   3'- -CUGUUGGU------------GCCAAAGCCGuuccCGGU- -5'
23296 5' -55 NC_005259.1 + 43945 0.66 0.784972
Target:  5'- uGACAGCguCGGcgaUgGGCG-GGGCCGc -3'
miRNA:   3'- -CUGUUGguGCCaa-AgCCGUuCCCGGU- -5'
23296 5' -55 NC_005259.1 + 42739 0.66 0.775069
Target:  5'- aGGCAugUgcuugagcagGCGGUUcucgaucugcUCGGCGgucucGGGGCCGc -3'
miRNA:   3'- -CUGUugG----------UGCCAA----------AGCCGU-----UCCCGGU- -5'
23296 5' -55 NC_005259.1 + 4663 0.66 0.775069
Target:  5'- uACGGgCACGGUgucugcacUGGCucGGGCCGa -3'
miRNA:   3'- cUGUUgGUGCCAaa------GCCGuuCCCGGU- -5'
23296 5' -55 NC_005259.1 + 27390 0.66 0.775069
Target:  5'- -cCGGCgGCGGUgUCGGCAGcGGCg- -3'
miRNA:   3'- cuGUUGgUGCCAaAGCCGUUcCCGgu -5'
23296 5' -55 NC_005259.1 + 48945 0.66 0.765019
Target:  5'- aGGCcACCGuCGGUUacaUCGGCAAcgcccgcauGGGUCGu -3'
miRNA:   3'- -CUGuUGGU-GCCAA---AGCCGUU---------CCCGGU- -5'
23296 5' -55 NC_005259.1 + 28354 0.66 0.762992
Target:  5'- --aGGCCACGGUgcUGGCugccccaccucGGGCCGa -3'
miRNA:   3'- cugUUGGUGCCAaaGCCGuu---------CCCGGU- -5'
23296 5' -55 NC_005259.1 + 58573 0.66 0.754835
Target:  5'- gGGCcgGAUCGCGGcg-CGGCugccGGGCCGg -3'
miRNA:   3'- -CUG--UUGGUGCCaaaGCCGuu--CCCGGU- -5'
23296 5' -55 NC_005259.1 + 13128 0.66 0.754835
Target:  5'- cGAcCAGCgCACGGUgUUCGGCucgaucauGGCCAc -3'
miRNA:   3'- -CU-GUUG-GUGCCA-AAGCCGuuc-----CCGGU- -5'
23296 5' -55 NC_005259.1 + 9563 0.67 0.734106
Target:  5'- -uCGACCGCG---UCGGCGAGGuGCUc -3'
miRNA:   3'- cuGUUGGUGCcaaAGCCGUUCC-CGGu -5'
23296 5' -55 NC_005259.1 + 46393 0.67 0.712973
Target:  5'- cGCAGCCGCG----CGGUGAGGGCa- -3'
miRNA:   3'- cUGUUGGUGCcaaaGCCGUUCCCGgu -5'
23296 5' -55 NC_005259.1 + 51271 0.68 0.658956
Target:  5'- -gUggUCACGGUgcgCGGCAAGcGGCa- -3'
miRNA:   3'- cuGuuGGUGCCAaa-GCCGUUC-CCGgu -5'
23296 5' -55 NC_005259.1 + 11399 0.68 0.637103
Target:  5'- ---uGCCucaaGCGGUUUCGGCucGuGGCCGg -3'
miRNA:   3'- cuguUGG----UGCCAAAGCCGuuC-CCGGU- -5'
23296 5' -55 NC_005259.1 + 15325 0.68 0.626165
Target:  5'- -uCGACgGCGGUacUGGUAaaGGGGCCAa -3'
miRNA:   3'- cuGUUGgUGCCAaaGCCGU--UCCCGGU- -5'
23296 5' -55 NC_005259.1 + 58934 0.69 0.604313
Target:  5'- cGGCGGgCGCGGUggcagcgUCGGCcuuGGCCAg -3'
miRNA:   3'- -CUGUUgGUGCCAa------AGCCGuucCCGGU- -5'
23296 5' -55 NC_005259.1 + 60305 0.69 0.604313
Target:  5'- uGCGGCCACGGa--CGGCGAaaccGGGCg- -3'
miRNA:   3'- cUGUUGGUGCCaaaGCCGUU----CCCGgu -5'
23296 5' -55 NC_005259.1 + 42340 0.69 0.593418
Target:  5'- --aAACCACGGgg-CGaGCucGGGCCGg -3'
miRNA:   3'- cugUUGGUGCCaaaGC-CGuuCCCGGU- -5'
23296 5' -55 NC_005259.1 + 783 0.69 0.582556
Target:  5'- aGGCGGCUgcccuCGGUUgggUGGCcaAGGGGCCGg -3'
miRNA:   3'- -CUGUUGGu----GCCAAa--GCCG--UUCCCGGU- -5'
23296 5' -55 NC_005259.1 + 29946 0.69 0.571734
Target:  5'- cGCGGCC-CGGUcgCGGCugguGGGGCgGg -3'
miRNA:   3'- cUGUUGGuGCCAaaGCCGu---UCCCGgU- -5'
23296 5' -55 NC_005259.1 + 49637 0.7 0.52901
Target:  5'- cGGCAGCCGCG---UCGGCGauGGcGGCCu -3'
miRNA:   3'- -CUGUUGGUGCcaaAGCCGU--UC-CCGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.