Results 1 - 8 of 8 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 23297 | 3' | -49.6 | NC_005259.1 | + | 45904 | 0.67 | 0.957984 |
|
Target: 5'- cGGUCGGCGGGcaccGCUGGUaGACcgagGCUc -3' miRNA: 3'- -CUAGCUGCCCc---UGAUCAaCUGaa--UGG- -5' |
|||||||
| 23297 | 3' | -49.6 | NC_005259.1 | + | 5257 | 0.67 | 0.95249 |
|
Target: 5'- -cUCGGCGGGGACUacGGUcagugucccgucguUGACaucgagucACCg -3' miRNA: 3'- cuAGCUGCCCCUGA--UCA--------------ACUGaa------UGG- -5' |
|||||||
| 23297 | 3' | -49.6 | NC_005259.1 | + | 26690 | 0.68 | 0.944607 |
|
Target: 5'- cAUCGagGCGGGGAacucggGGUUGAUUUccucgACCa -3' miRNA: 3'- cUAGC--UGCCCCUga----UCAACUGAA-----UGG- -5' |
|||||||
| 23297 | 3' | -49.6 | NC_005259.1 | + | 28015 | 0.68 | 0.944607 |
|
Target: 5'- gGGUCGcCGGGGuugcGCgcGUUGGCcaGCCa -3' miRNA: 3'- -CUAGCuGCCCC----UGauCAACUGaaUGG- -5' |
|||||||
| 23297 | 3' | -49.6 | NC_005259.1 | + | 61608 | 0.68 | 0.944607 |
|
Target: 5'- gGGUCGGCGGGGAacAGcaGACcggcACCg -3' miRNA: 3'- -CUAGCUGCCCCUgaUCaaCUGaa--UGG- -5' |
|||||||
| 23297 | 3' | -49.6 | NC_005259.1 | + | 67474 | 0.68 | 0.934294 |
|
Target: 5'- --aUGGCGGGGAUauuGaUGACUcGCCa -3' miRNA: 3'- cuaGCUGCCCCUGau-CaACUGAaUGG- -5' |
|||||||
| 23297 | 3' | -49.6 | NC_005259.1 | + | 24555 | 0.73 | 0.741461 |
|
Target: 5'- aGAUCGGCGGGGugUAcucGUgGGC--ACCg -3' miRNA: 3'- -CUAGCUGCCCCugAU---CAaCUGaaUGG- -5' |
|||||||
| 23297 | 3' | -49.6 | NC_005259.1 | + | 19730 | 1.12 | 0.003699 |
|
Target: 5'- uGAUCGACGGGGACUAGUUGACUUACCc -3' miRNA: 3'- -CUAGCUGCCCCUGAUCAACUGAAUGG- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home