miRNA display CGI


Results 1 - 20 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23297 5' -51.6 NC_005259.1 + 19765 1.14 0.001503
Target:  5'- gCGGGUAAGUUCAUCACCAGCAGCACCa -3'
miRNA:   3'- -GCCCAUUCAAGUAGUGGUCGUCGUGG- -5'
23297 5' -51.6 NC_005259.1 + 22075 0.74 0.513653
Target:  5'- cCGuGGUGAGcUCAUCgACCAGauggcgGGCACCa -3'
miRNA:   3'- -GC-CCAUUCaAGUAG-UGGUCg-----UCGUGG- -5'
23297 5' -51.6 NC_005259.1 + 13796 0.73 0.578662
Target:  5'- aGuGGUGcga-CAUCACCGGCgAGCACCa -3'
miRNA:   3'- gC-CCAUucaaGUAGUGGUCG-UCGUGG- -5'
23297 5' -51.6 NC_005259.1 + 31615 0.72 0.656376
Target:  5'- uCGGGUcu-UUUGUCGCCAGCGcguuguacuGCGCCa -3'
miRNA:   3'- -GCCCAuucAAGUAGUGGUCGU---------CGUGG- -5'
23297 5' -51.6 NC_005259.1 + 26032 0.71 0.66636
Target:  5'- gCGGGU-------UgGCCAGCAGCGCCg -3'
miRNA:   3'- -GCCCAuucaaguAgUGGUCGUCGUGG- -5'
23297 5' -51.6 NC_005259.1 + 19619 0.71 0.671896
Target:  5'- uGGGUcugcGGUUCAaccucauugagacgcUCACCGGCAcCGCCu -3'
miRNA:   3'- gCCCAu---UCAAGU---------------AGUGGUCGUcGUGG- -5'
23297 5' -51.6 NC_005259.1 + 62363 0.71 0.700498
Target:  5'- cCGGGUAGGaUCAgcUCAUCgAGUAGCAgauCCa -3'
miRNA:   3'- -GCCCAUUCaAGU--AGUGG-UCGUCGU---GG- -5'
23297 5' -51.6 NC_005259.1 + 60597 0.7 0.732915
Target:  5'- uCGGGUGc---CGUCAUCgAGCAGCACa -3'
miRNA:   3'- -GCCCAUucaaGUAGUGG-UCGUCGUGg -5'
23297 5' -51.6 NC_005259.1 + 55 0.7 0.764401
Target:  5'- uCGGGUAacuuAGUUCGUguCaGGCGGgACCg -3'
miRNA:   3'- -GCCCAU----UCAAGUAguGgUCGUCgUGG- -5'
23297 5' -51.6 NC_005259.1 + 53506 0.7 0.764401
Target:  5'- -cGGUGAacaacGUgcUCGUgGCCAGCGGCACg -3'
miRNA:   3'- gcCCAUU-----CA--AGUAgUGGUCGUCGUGg -5'
23297 5' -51.6 NC_005259.1 + 24202 0.69 0.794638
Target:  5'- cCGGGUcaucGAGacCAUCgacaacgugACCGGCGGgGCCg -3'
miRNA:   3'- -GCCCA----UUCaaGUAG---------UGGUCGUCgUGG- -5'
23297 5' -51.6 NC_005259.1 + 49612 0.69 0.798558
Target:  5'- uCGGGcagcucaucaUCGUCAUCGGCGGCAgCCg -3'
miRNA:   3'- -GCCCauuca-----AGUAGUGGUCGUCGU-GG- -5'
23297 5' -51.6 NC_005259.1 + 21759 0.69 0.804385
Target:  5'- uCGGGUAAGUUCugauggACCGGCuG-ACCu -3'
miRNA:   3'- -GCCCAUUCAAGuag---UGGUCGuCgUGG- -5'
23297 5' -51.6 NC_005259.1 + 21975 0.69 0.813948
Target:  5'- uGGGUGucGUUC-UCcCCAcCGGCACCg -3'
miRNA:   3'- gCCCAUu-CAAGuAGuGGUcGUCGUGG- -5'
23297 5' -51.6 NC_005259.1 + 28743 0.69 0.817719
Target:  5'- aGGGUuacgcgcccgagcguGAGaUCGUCGCCGGUgccgacgaGGUACCc -3'
miRNA:   3'- gCCCA---------------UUCaAGUAGUGGUCG--------UCGUGG- -5'
23297 5' -51.6 NC_005259.1 + 30748 0.68 0.829751
Target:  5'- ----aGAGUUCAUgaacugcaugccgaCGCCGGUGGCACCg -3'
miRNA:   3'- gcccaUUCAAGUA--------------GUGGUCGUCGUGG- -5'
23297 5' -51.6 NC_005259.1 + 702 0.68 0.83157
Target:  5'- gGGGUcugaacaugAGGUggcaucgcgagaaUCA-CACCGGCGGUGCCu -3'
miRNA:   3'- gCCCA---------UUCA-------------AGUaGUGGUCGUCGUGG- -5'
23297 5' -51.6 NC_005259.1 + 46400 0.68 0.832477
Target:  5'- gCGcGGUGAGggCAUCgaaACCGgGCuguGCACCc -3'
miRNA:   3'- -GC-CCAUUCaaGUAG---UGGU-CGu--CGUGG- -5'
23297 5' -51.6 NC_005259.1 + 57271 0.68 0.850145
Target:  5'- uGGGcGAGggauUgACCGGUGGCACCu -3'
miRNA:   3'- gCCCaUUCaaguAgUGGUCGUCGUGG- -5'
23297 5' -51.6 NC_005259.1 + 49558 0.68 0.850145
Target:  5'- cCGGGcu-GUUCGUCggucguggccagACCGGCgggcggggucAGCACCu -3'
miRNA:   3'- -GCCCauuCAAGUAG------------UGGUCG----------UCGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.