miRNA display CGI


Results 21 - 30 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23297 5' -51.6 NC_005259.1 + 24202 0.69 0.794638
Target:  5'- cCGGGUcaucGAGacCAUCgacaacgugACCGGCGGgGCCg -3'
miRNA:   3'- -GCCCA----UUCaaGUAG---------UGGUCGUCgUGG- -5'
23297 5' -51.6 NC_005259.1 + 22075 0.74 0.513653
Target:  5'- cCGuGGUGAGcUCAUCgACCAGauggcgGGCACCa -3'
miRNA:   3'- -GC-CCAUUCaAGUAG-UGGUCg-----UCGUGG- -5'
23297 5' -51.6 NC_005259.1 + 21975 0.69 0.813948
Target:  5'- uGGGUGucGUUC-UCcCCAcCGGCACCg -3'
miRNA:   3'- gCCCAUu-CAAGuAGuGGUcGUCGUGG- -5'
23297 5' -51.6 NC_005259.1 + 21759 0.69 0.804385
Target:  5'- uCGGGUAAGUUCugauggACCGGCuG-ACCu -3'
miRNA:   3'- -GCCCAUUCAAGuag---UGGUCGuCgUGG- -5'
23297 5' -51.6 NC_005259.1 + 19765 1.14 0.001503
Target:  5'- gCGGGUAAGUUCAUCACCAGCAGCACCa -3'
miRNA:   3'- -GCCCAUUCAAGUAGUGGUCGUCGUGG- -5'
23297 5' -51.6 NC_005259.1 + 19619 0.71 0.671896
Target:  5'- uGGGUcugcGGUUCAaccucauugagacgcUCACCGGCAcCGCCu -3'
miRNA:   3'- gCCCAu---UCAAGU---------------AGUGGUCGUcGUGG- -5'
23297 5' -51.6 NC_005259.1 + 13796 0.73 0.578662
Target:  5'- aGuGGUGcga-CAUCACCGGCgAGCACCa -3'
miRNA:   3'- gC-CCAUucaaGUAGUGGUCG-UCGUGG- -5'
23297 5' -51.6 NC_005259.1 + 8553 0.67 0.904232
Target:  5'- gCGGuGUAGcc-CAUgCGCC-GCAGCACCg -3'
miRNA:   3'- -GCC-CAUUcaaGUA-GUGGuCGUCGUGG- -5'
23297 5' -51.6 NC_005259.1 + 702 0.68 0.83157
Target:  5'- gGGGUcugaacaugAGGUggcaucgcgagaaUCA-CACCGGCGGUGCCu -3'
miRNA:   3'- gCCCA---------UUCA-------------AGUaGUGGUCGUCGUGG- -5'
23297 5' -51.6 NC_005259.1 + 55 0.7 0.764401
Target:  5'- uCGGGUAacuuAGUUCGUguCaGGCGGgACCg -3'
miRNA:   3'- -GCCCAU----UCAAGUAguGgUCGUCgUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.