miRNA display CGI


Results 21 - 40 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23298 3' -63.4 NC_005259.1 + 23350 0.78 0.056639
Target:  5'- -cUCGA-GGCUGCCUG-CGaGGCCGCCg -3'
miRNA:   3'- cuAGCUaCCGGCGGACgGC-CCGGCGG- -5'
23298 3' -63.4 NC_005259.1 + 25907 0.78 0.053645
Target:  5'- ---gGAUGGCCGCCUgaGCCGccGCCGCCg -3'
miRNA:   3'- cuagCUACCGGCGGA--CGGCc-CGGCGG- -5'
23298 3' -63.4 NC_005259.1 + 26020 0.69 0.23181
Target:  5'- ---gGAUGGCCGCaaGCgGGuuggccagcagcGCCGCCg -3'
miRNA:   3'- cuagCUACCGGCGgaCGgCC------------CGGCGG- -5'
23298 3' -63.4 NC_005259.1 + 26055 0.67 0.314901
Target:  5'- gGGUUGGccauGCCGCC-GCCGagcagucccccgaGGCCGCCg -3'
miRNA:   3'- -CUAGCUac--CGGCGGaCGGC-------------CCGGCGG- -5'
23298 3' -63.4 NC_005259.1 + 26110 0.66 0.376836
Target:  5'- cGAgcaGAccGCCGCC-GCCGGucgccgguccgacGCCGCCg -3'
miRNA:   3'- -CUag-CUacCGGCGGaCGGCC-------------CGGCGG- -5'
23298 3' -63.4 NC_005259.1 + 27991 0.67 0.30137
Target:  5'- -uUgGGUGGUgcgggUGCCgggGCgGGGUCGCCg -3'
miRNA:   3'- cuAgCUACCG-----GCGGa--CGgCCCGGCGG- -5'
23298 3' -63.4 NC_005259.1 + 28619 0.68 0.261599
Target:  5'- --aUGAUGGCCaagGCCaaggccaccggUGCCGacaccgccgaGGCCGCCg -3'
miRNA:   3'- cuaGCUACCGG---CGG-----------ACGGC----------CCGGCGG- -5'
23298 3' -63.4 NC_005259.1 + 29927 0.71 0.180793
Target:  5'- cAUCGAcgcgUGGCCGCCacgcgGCCcGGUCGCg -3'
miRNA:   3'- cUAGCU----ACCGGCGGa----CGGcCCGGCGg -5'
23298 3' -63.4 NC_005259.1 + 30154 0.73 0.136395
Target:  5'- -cUCGAccgGGCCGCCUaCa-GGCCGCCa -3'
miRNA:   3'- cuAGCUa--CCGGCGGAcGgcCCGGCGG- -5'
23298 3' -63.4 NC_005259.1 + 32357 0.67 0.345646
Target:  5'- aGGUUGAUGaCCGCCguguagGgCGGGCacugccCGCCg -3'
miRNA:   3'- -CUAGCUACcGGCGGa-----CgGCCCG------GCGG- -5'
23298 3' -63.4 NC_005259.1 + 34439 0.67 0.322942
Target:  5'- -cUCGAUGaGCUGCC-GaCCGGGCaGCg -3'
miRNA:   3'- cuAGCUAC-CGGCGGaC-GGCCCGgCGg -5'
23298 3' -63.4 NC_005259.1 + 35502 0.67 0.345646
Target:  5'- gGGUUGGccccguuGCCGCCgccGCCGGGCacacCGCCc -3'
miRNA:   3'- -CUAGCUac-----CGGCGGa--CGGCCCG----GCGG- -5'
23298 3' -63.4 NC_005259.1 + 35624 0.72 0.139977
Target:  5'- cGUCGAguaguucgGGCCGCC-GCCGcuGCCGCUg -3'
miRNA:   3'- cUAGCUa-------CCGGCGGaCGGCc-CGGCGG- -5'
23298 3' -63.4 NC_005259.1 + 36656 0.66 0.38597
Target:  5'- --gCGAgccGCCGCCcucGCCGccGCCGCCg -3'
miRNA:   3'- cuaGCUac-CGGCGGa--CGGCc-CGGCGG- -5'
23298 3' -63.4 NC_005259.1 + 37215 0.66 0.37766
Target:  5'- --cCGcc-GCCGCC-GCCGGGgCGCUg -3'
miRNA:   3'- cuaGCuacCGGCGGaCGGCCCgGCGG- -5'
23298 3' -63.4 NC_005259.1 + 37245 0.69 0.248723
Target:  5'- --cCGGauUGGCUGCC-GCCGuugccaggcuugaGGCCGCCc -3'
miRNA:   3'- cuaGCU--ACCGGCGGaCGGC-------------CCGGCGG- -5'
23298 3' -63.4 NC_005259.1 + 37512 0.69 0.241018
Target:  5'- --aCGAU-GCUGCCcgacgagaagaucGUCGGGCCGCCg -3'
miRNA:   3'- cuaGCUAcCGGCGGa------------CGGCCCGGCGG- -5'
23298 3' -63.4 NC_005259.1 + 37644 0.76 0.07224
Target:  5'- --cCGAUGaccgcaccGCCGCCgccGCCGGuGCCGCCa -3'
miRNA:   3'- cuaGCUAC--------CGGCGGa--CGGCC-CGGCGG- -5'
23298 3' -63.4 NC_005259.1 + 37761 0.67 0.322942
Target:  5'- aGcgCGGUGGCC-CCUG-CGGGCacgaGCg -3'
miRNA:   3'- -CuaGCUACCGGcGGACgGCCCGg---CGg -5'
23298 3' -63.4 NC_005259.1 + 38664 0.67 0.330385
Target:  5'- aAUCGAccaccucgcuguUGGCCGCCggGUCGaGGuuGgCCa -3'
miRNA:   3'- cUAGCU------------ACCGGCGGa-CGGC-CCggC-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.