miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23299 5' -53.6 NC_005259.1 + 65183 0.66 0.866084
Target:  5'- -cAAGGCGCugGUCGAUCAGauccGGUgGGu -3'
miRNA:   3'- caUUCCGUGugUGGCUAGUC----CCAgCU- -5'
23299 5' -53.6 NC_005259.1 + 43041 0.66 0.849527
Target:  5'- --cAGGC-CGCcgagcagcgaACCGA-CGGGGUCGGu -3'
miRNA:   3'- cauUCCGuGUG----------UGGCUaGUCCCAGCU- -5'
23299 5' -53.6 NC_005259.1 + 64222 0.67 0.813761
Target:  5'- ---cGGCA-GC-CCGGuaUCGGGGUCGAu -3'
miRNA:   3'- cauuCCGUgUGuGGCU--AGUCCCAGCU- -5'
23299 5' -53.6 NC_005259.1 + 20694 0.67 0.813761
Target:  5'- ---cGGCACGCGC---UCGGuGGUCGAa -3'
miRNA:   3'- cauuCCGUGUGUGgcuAGUC-CCAGCU- -5'
23299 5' -53.6 NC_005259.1 + 42001 0.67 0.808118
Target:  5'- gGUGAGGaC-CACACCGuggcgAUCAcgcacgaggguugucGGGUCGAc -3'
miRNA:   3'- -CAUUCC-GuGUGUGGC-----UAGU---------------CCCAGCU- -5'
23299 5' -53.6 NC_005259.1 + 33799 0.67 0.794699
Target:  5'- cGUGAGGuCGC-CAUCGAUCAucgugacgGGGUCc- -3'
miRNA:   3'- -CAUUCC-GUGuGUGGCUAGU--------CCCAGcu -5'
23299 5' -53.6 NC_005259.1 + 56449 0.67 0.774961
Target:  5'- --cGGGC-CACGCaGcUCAGGGUUGAc -3'
miRNA:   3'- cauUCCGuGUGUGgCuAGUCCCAGCU- -5'
23299 5' -53.6 NC_005259.1 + 44998 0.68 0.723242
Target:  5'- -cGAGGCAC-CGCCGAccgcCGGGGcCGc -3'
miRNA:   3'- caUUCCGUGuGUGGCUa---GUCCCaGCu -5'
23299 5' -53.6 NC_005259.1 + 18160 0.69 0.691036
Target:  5'- --cGGGCugACGCCGgAUCuGGcaGUCGAg -3'
miRNA:   3'- cauUCCGugUGUGGC-UAGuCC--CAGCU- -5'
23299 5' -53.6 NC_005259.1 + 44755 0.7 0.613307
Target:  5'- -cGAGGCucuugaGCACCGAucccgcaUCGGcGGUCGAg -3'
miRNA:   3'- caUUCCGug----UGUGGCU-------AGUC-CCAGCU- -5'
23299 5' -53.6 NC_005259.1 + 45741 0.71 0.592501
Target:  5'- -cGAGGcCGCGCACCGccUCGGGGaUGAg -3'
miRNA:   3'- caUUCC-GUGUGUGGCu-AGUCCCaGCU- -5'
23299 5' -53.6 NC_005259.1 + 33325 0.71 0.559915
Target:  5'- ---cGGCGguCACGCggaagUGAUCGGGGUCGAu -3'
miRNA:   3'- cauuCCGU--GUGUG-----GCUAGUCCCAGCU- -5'
23299 5' -53.6 NC_005259.1 + 57054 0.72 0.486218
Target:  5'- --uAGGCcCACACCguGAUC-GGGUCGAa -3'
miRNA:   3'- cauUCCGuGUGUGG--CUAGuCCCAGCU- -5'
23299 5' -53.6 NC_005259.1 + 19144 1.09 0.001799
Target:  5'- aGUAAGGCACACACCGAUCAGGGUCGAg -3'
miRNA:   3'- -CAUUCCGUGUGUGGCUAGUCCCAGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.