miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
233 5' -56.9 AC_000008.1 + 22231 0.66 0.539947
Target:  5'- uCUACagcuUCCuGGAG-CGCCACUCGCc -3'
miRNA:   3'- -GGUGauu-GGGcCCUCgGUGGUGAGCG- -5'
233 5' -56.9 AC_000008.1 + 11726 0.66 0.536712
Target:  5'- gCGCUGcuaaacauaguagaGCCCGaGGGCCGCUggcuGCUCGa -3'
miRNA:   3'- gGUGAU--------------UGGGCcCUCGGUGG----UGAGCg -5'
233 5' -56.9 AC_000008.1 + 23560 0.66 0.529193
Target:  5'- aCCACgcGCCacuGGGucgucuucauucAGCCGCCGCacugugCGCu -3'
miRNA:   3'- -GGUGauUGGg--CCC------------UCGGUGGUGa-----GCG- -5'
233 5' -56.9 AC_000008.1 + 15980 0.66 0.518519
Target:  5'- aCCGCgcGCCCuGGGGCgCGCaCAaaCGCg -3'
miRNA:   3'- -GGUGauUGGGcCCUCG-GUG-GUgaGCG- -5'
233 5' -56.9 AC_000008.1 + 16762 0.66 0.497436
Target:  5'- aCCACcGuagucuuuacGCCCGGuGAGCgCuCCACcCGCa -3'
miRNA:   3'- -GGUGaU----------UGGGCC-CUCG-GuGGUGaGCG- -5'
233 5' -56.9 AC_000008.1 + 17796 0.67 0.48704
Target:  5'- uCCACagcgAGCCCcagcugaaGGcGCCACCGCUCa- -3'
miRNA:   3'- -GGUGa---UUGGGc-------CCuCGGUGGUGAGcg -5'
233 5' -56.9 AC_000008.1 + 19540 0.67 0.475724
Target:  5'- gCACUAAUggCCGcGGcugcugcGGCgGCCGCUCGUc -3'
miRNA:   3'- gGUGAUUG--GGC-CC-------UCGgUGGUGAGCG- -5'
233 5' -56.9 AC_000008.1 + 35309 0.68 0.436711
Target:  5'- aCCGaaaUAGCCCGGGGGaauaCAuacCCGCagGCg -3'
miRNA:   3'- -GGUg--AUUGGGCCCUCg---GU---GGUGagCG- -5'
233 5' -56.9 AC_000008.1 + 3795 0.68 0.417432
Target:  5'- gCCGCUucAGCCgCuGcAGCCACCGCcCGCg -3'
miRNA:   3'- -GGUGA--UUGG-GcCcUCGGUGGUGaGCG- -5'
233 5' -56.9 AC_000008.1 + 8776 0.68 0.407988
Target:  5'- -uGCUGGCgCCGGGuGUgGCCGCUgGa -3'
miRNA:   3'- ggUGAUUG-GGCCCuCGgUGGUGAgCg -5'
233 5' -56.9 AC_000008.1 + 26466 0.68 0.393161
Target:  5'- aCCACUGgaACCaGGGccgguaaguccaagcAGCCGCCGC-CGUu -3'
miRNA:   3'- -GGUGAU--UGGgCCC---------------UCGGUGGUGaGCG- -5'
233 5' -56.9 AC_000008.1 + 17502 0.69 0.371585
Target:  5'- aCCACUGgaACCCGcc-GCCGCCG-UCGCc -3'
miRNA:   3'- -GGUGAU--UGGGCccuCGGUGGUgAGCG- -5'
233 5' -56.9 AC_000008.1 + 25528 0.69 0.344099
Target:  5'- aCGCUGGCCCcucuaccgccAGCCGCCGC-CGCa -3'
miRNA:   3'- gGUGAUUGGGccc-------UCGGUGGUGaGCG- -5'
233 5' -56.9 AC_000008.1 + 16190 0.71 0.276233
Target:  5'- gCCGCcGACCCGGcacuGCCGCCcaACgCGCg -3'
miRNA:   3'- -GGUGaUUGGGCCcu--CGGUGG--UGaGCG- -5'
233 5' -56.9 AC_000008.1 + 15707 0.74 0.175876
Target:  5'- cUCACaGAUCaCGGGAcGCUACCGCUgCGCa -3'
miRNA:   3'- -GGUGaUUGG-GCCCU-CGGUGGUGA-GCG- -5'
233 5' -56.9 AC_000008.1 + 31774 0.76 0.122436
Target:  5'- aCCGCUGGuCCCGGGc-CUACCGCgcgCGCa -3'
miRNA:   3'- -GGUGAUU-GGGCCCucGGUGGUGa--GCG- -5'
233 5' -56.9 AC_000008.1 + 15539 1.13 0.000244
Target:  5'- uCCACUAACCCGGGAGCCACCACUCGCu -3'
miRNA:   3'- -GGUGAUUGGGCCCUCGGUGGUGAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.