miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23300 5' -59.7 NC_005259.1 + 31687 0.66 0.534211
Target:  5'- -cCGAGGCAUccucGGcGGUGACCacaccgaUGCCGg -3'
miRNA:   3'- uuGCUCCGUA----CC-CCACUGGa------GCGGCg -5'
23300 5' -59.7 NC_005259.1 + 57019 0.66 0.513872
Target:  5'- cAGCGcGGCucggcgcgGUGGGGUcGCaCUCGUCGUa -3'
miRNA:   3'- -UUGCuCCG--------UACCCCAcUG-GAGCGGCG- -5'
23300 5' -59.7 NC_005259.1 + 14062 0.67 0.493856
Target:  5'- cGACGAGaccaGCAcGGcGGUGGCCUaCGUgCGCa -3'
miRNA:   3'- -UUGCUC----CGUaCC-CCACUGGA-GCG-GCG- -5'
23300 5' -59.7 NC_005259.1 + 32524 0.67 0.493856
Target:  5'- -uCGAGGCG-GGcGGcaggcuUGACCUUGCUGUu -3'
miRNA:   3'- uuGCUCCGUaCC-CC------ACUGGAGCGGCG- -5'
23300 5' -59.7 NC_005259.1 + 53033 0.67 0.474204
Target:  5'- -uCGAGGCAUc--GUGACCUCGCgGg -3'
miRNA:   3'- uuGCUCCGUAcccCACUGGAGCGgCg -5'
23300 5' -59.7 NC_005259.1 + 6203 0.67 0.464526
Target:  5'- cAGCGuGaGC--GGGGUGAgC-CGCCGCg -3'
miRNA:   3'- -UUGCuC-CGuaCCCCACUgGaGCGGCG- -5'
23300 5' -59.7 NC_005259.1 + 13315 0.67 0.458768
Target:  5'- cGGCGGGGUAUaucuugguaacccacGGcGG-GACCgcccCGCCGCa -3'
miRNA:   3'- -UUGCUCCGUA---------------CC-CCaCUGGa---GCGGCG- -5'
23300 5' -59.7 NC_005259.1 + 54701 0.68 0.43613
Target:  5'- -uCGAGGC---GGGUGGCCUCaGCCu- -3'
miRNA:   3'- uuGCUCCGuacCCCACUGGAG-CGGcg -5'
23300 5' -59.7 NC_005259.1 + 65712 0.69 0.354105
Target:  5'- gGACGAGGuCAcgcccaaggcgaguUGGGGUcGACCcauuggaUCGCCGa -3'
miRNA:   3'- -UUGCUCC-GU--------------ACCCCA-CUGG-------AGCGGCg -5'
23300 5' -59.7 NC_005259.1 + 3253 0.7 0.317375
Target:  5'- uGACGAGGUcgGcauccugcucGGGUGguuucccgucgccGCCUCGCCGg -3'
miRNA:   3'- -UUGCUCCGuaC----------CCCAC-------------UGGAGCGGCg -5'
23300 5' -59.7 NC_005259.1 + 12541 0.7 0.30994
Target:  5'- gAGCGAgccccacGGCAUugccGGGGUGGCC-CGCCa- -3'
miRNA:   3'- -UUGCU-------CCGUA----CCCCACUGGaGCGGcg -5'
23300 5' -59.7 NC_005259.1 + 5550 0.71 0.289132
Target:  5'- -cCGAGGCcgcGUGGGGUggugacggcgaGACCgUGCCGUg -3'
miRNA:   3'- uuGCUCCG---UACCCCA-----------CUGGaGCGGCG- -5'
23300 5' -59.7 NC_005259.1 + 18955 0.98 0.003216
Target:  5'- cAACGAGG-AUGGGGUGACCUCGCCGCg -3'
miRNA:   3'- -UUGCUCCgUACCCCACUGGAGCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.