Results 1 - 20 of 29 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23301 | 5' | -61.3 | NC_005259.1 | + | 47952 | 0.66 | 0.479298 |
Target: 5'- -cGGCGGUGcCGauGGcCGCCGCGCCg -3' miRNA: 3'- guUCGCCACcGUc-CCuGCGGCGUGGg -5' |
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23301 | 5' | -61.3 | NC_005259.1 | + | 58796 | 0.69 | 0.3024 |
Target: 5'- gAGGCGGUgauugccucGGCGGGcucGCGCUgcucgGCACCCu -3' miRNA: 3'- gUUCGCCA---------CCGUCCc--UGCGG-----CGUGGG- -5' |
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23301 | 5' | -61.3 | NC_005259.1 | + | 63645 | 0.69 | 0.309576 |
Target: 5'- gCGAGCuGcucgcUGGCcGGGACGCCGgACaCCu -3' miRNA: 3'- -GUUCGcC-----ACCGuCCCUGCGGCgUG-GG- -5' |
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23301 | 5' | -61.3 | NC_005259.1 | + | 32526 | 0.69 | 0.33188 |
Target: 5'- gAGGCGGgcGGCAGGcuuGACcuugcuguugGCCGC-CCCg -3' miRNA: 3'- gUUCGCCa-CCGUCC---CUG----------CGGCGuGGG- -5' |
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23301 | 5' | -61.3 | NC_005259.1 | + | 58563 | 0.68 | 0.339573 |
Target: 5'- uCGGGCGGUugGGCcGGaucgcGGCGCgGCugCCg -3' miRNA: 3'- -GUUCGCCA--CCGuCC-----CUGCGgCGugGG- -5' |
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23301 | 5' | -61.3 | NC_005259.1 | + | 24113 | 0.68 | 0.347393 |
Target: 5'- ---aUGGgaccgGGCGGGGAcuacacCGCCGcCGCCCu -3' miRNA: 3'- guucGCCa----CCGUCCCU------GCGGC-GUGGG- -5' |
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23301 | 5' | -61.3 | NC_005259.1 | + | 19851 | 0.68 | 0.379111 |
Target: 5'- --cGCGcucgguGUGGCGcucgcgcccgccGGGAucgccgaCGCCGCGCCCa -3' miRNA: 3'- guuCGC------CACCGU------------CCCU-------GCGGCGUGGG- -5' |
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23301 | 5' | -61.3 | NC_005259.1 | + | 58344 | 0.67 | 0.388401 |
Target: 5'- uCAGGuCGGUGGCcucGGGcACGUCGCAg-- -3' miRNA: 3'- -GUUC-GCCACCGu--CCC-UGCGGCGUggg -5' |
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23301 | 5' | -61.3 | NC_005259.1 | + | 61945 | 0.67 | 0.400439 |
Target: 5'- --cGCgGGUGcCGGGGccaccgcagccucacGCGCCGCugCCu -3' miRNA: 3'- guuCG-CCACcGUCCC---------------UGCGGCGugGG- -5' |
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23301 | 5' | -61.3 | NC_005259.1 | + | 50438 | 0.69 | 0.3024 |
Target: 5'- -cAGCGGUgcgGGCucGGGGuCGCCGguCUCg -3' miRNA: 3'- guUCGCCA---CCG--UCCCuGCGGCguGGG- -5' |
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23301 | 5' | -61.3 | NC_005259.1 | + | 18381 | 0.69 | 0.295352 |
Target: 5'- aGGGCGGUaGCgAGGGAgacgagcaccuCGCCGaGCCCg -3' miRNA: 3'- gUUCGCCAcCG-UCCCU-----------GCGGCgUGGG- -5' |
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23301 | 5' | -61.3 | NC_005259.1 | + | 32099 | 0.69 | 0.288433 |
Target: 5'- cCGGGCGGUGGC-GGGAaauaGCUcuCACCg -3' miRNA: 3'- -GUUCGCCACCGuCCCUg---CGGc-GUGGg -5' |
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23301 | 5' | -61.3 | NC_005259.1 | + | 35672 | 0.76 | 0.098433 |
Target: 5'- --cGCGGUGGUGGugcacagcGACGCCGUGCCCg -3' miRNA: 3'- guuCGCCACCGUCc-------CUGCGGCGUGGG- -5' |
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23301 | 5' | -61.3 | NC_005259.1 | + | 51642 | 0.72 | 0.189654 |
Target: 5'- gGAGCGGUaGGCGaacGGGuuGCCGCGCg- -3' miRNA: 3'- gUUCGCCA-CCGU---CCCugCGGCGUGgg -5' |
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23301 | 5' | -61.3 | NC_005259.1 | + | 6199 | 0.72 | 0.199521 |
Target: 5'- uGAGCaGcGUGaGCGGGGugagcCGCCGCGCCg -3' miRNA: 3'- gUUCG-C-CAC-CGUCCCu----GCGGCGUGGg -5' |
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23301 | 5' | -61.3 | NC_005259.1 | + | 60425 | 0.71 | 0.226156 |
Target: 5'- -cGGgGGUGGCccacGGGGCgGCCaCGCCCg -3' miRNA: 3'- guUCgCCACCGu---CCCUG-CGGcGUGGG- -5' |
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23301 | 5' | -61.3 | NC_005259.1 | + | 48050 | 0.71 | 0.226156 |
Target: 5'- ---cCGGUGGCcacggcGGGuagcgcCGCCGCGCCCu -3' miRNA: 3'- guucGCCACCGu-----CCCu-----GCGGCGUGGG- -5' |
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23301 | 5' | -61.3 | NC_005259.1 | + | 21390 | 0.7 | 0.249583 |
Target: 5'- gAGGCGGUGcaacgcGCAuGGGACGCCcGUagACCUg -3' miRNA: 3'- gUUCGCCAC------CGU-CCCUGCGG-CG--UGGG- -5' |
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23301 | 5' | -61.3 | NC_005259.1 | + | 32589 | 0.7 | 0.249583 |
Target: 5'- -cAGCGGUuuacgcgcGuGCA-GGACGCCGaCACCCu -3' miRNA: 3'- guUCGCCA--------C-CGUcCCUGCGGC-GUGGG- -5' |
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23301 | 5' | -61.3 | NC_005259.1 | + | 43954 | 0.7 | 0.281642 |
Target: 5'- -cGGCGaugGGCGGGGcCGCCGCcugACCg -3' miRNA: 3'- guUCGCca-CCGUCCCuGCGGCG---UGGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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