miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23302 5' -54.3 NC_005259.1 + 3172 0.66 0.858321
Target:  5'- gCCCggCGAUGUCaagguCGuCGGUgCGCGCAc -3'
miRNA:   3'- -GGG--GCUACAGau---GCuGUCAgGCGUGU- -5'
23302 5' -54.3 NC_005259.1 + 22470 0.66 0.841633
Target:  5'- gCCCgCGcgGUCU--GACcGUCCGCAUc -3'
miRNA:   3'- -GGG-GCuaCAGAugCUGuCAGGCGUGu -5'
23302 5' -54.3 NC_005259.1 + 51360 0.66 0.841633
Target:  5'- gCCCGGUGgcacCGGCAcaCCGCGCGu -3'
miRNA:   3'- gGGGCUACagauGCUGUcaGGCGUGU- -5'
23302 5' -54.3 NC_005259.1 + 2292 0.66 0.832968
Target:  5'- aUCCCGGUuUCUGauACAGUCgGCAUu -3'
miRNA:   3'- -GGGGCUAcAGAUgcUGUCAGgCGUGu -5'
23302 5' -54.3 NC_005259.1 + 29882 0.66 0.832968
Target:  5'- gCCCGAUGUCgagguCGGCAa---GCACAa -3'
miRNA:   3'- gGGGCUACAGau---GCUGUcaggCGUGU- -5'
23302 5' -54.3 NC_005259.1 + 46746 0.67 0.818685
Target:  5'- gCCCgCGAUGgCUGCgccgacaccugcgccGACAG-CCGCGCc -3'
miRNA:   3'- -GGG-GCUACaGAUG---------------CUGUCaGGCGUGu -5'
23302 5' -54.3 NC_005259.1 + 2226 0.67 0.815037
Target:  5'- gCCCGGccucgccauuUGUCgGCGACAGcCgGUACGg -3'
miRNA:   3'- gGGGCU----------ACAGaUGCUGUCaGgCGUGU- -5'
23302 5' -54.3 NC_005259.1 + 27506 0.67 0.815037
Target:  5'- gCgCCGAgGUCgACGu--GUCCGCACAc -3'
miRNA:   3'- -GgGGCUaCAGaUGCuguCAGGCGUGU- -5'
23302 5' -54.3 NC_005259.1 + 64199 0.68 0.757134
Target:  5'- uCCUCGAUGUCgaccuCGcCGGUCgGCAg- -3'
miRNA:   3'- -GGGGCUACAGau---GCuGUCAGgCGUgu -5'
23302 5' -54.3 NC_005259.1 + 33466 0.69 0.694818
Target:  5'- gCCgGGUGUCUG-GACuG-CCGCACGg -3'
miRNA:   3'- gGGgCUACAGAUgCUGuCaGGCGUGU- -5'
23302 5' -54.3 NC_005259.1 + 64570 0.69 0.684166
Target:  5'- uCCUCGGUGUCgGCGAaaCGGgCCaGCACAc -3'
miRNA:   3'- -GGGGCUACAGaUGCU--GUCaGG-CGUGU- -5'
23302 5' -54.3 NC_005259.1 + 19060 0.7 0.64118
Target:  5'- gCCaCCGAUGUCgguguCG-CGGUCCgGCGCu -3'
miRNA:   3'- -GG-GGCUACAGau---GCuGUCAGG-CGUGu -5'
23302 5' -54.3 NC_005259.1 + 46264 0.7 0.64118
Target:  5'- aCCCCGAggGUCUGCGcgaGGuUCUGCaACAg -3'
miRNA:   3'- -GGGGCUa-CAGAUGCug-UC-AGGCG-UGU- -5'
23302 5' -54.3 NC_005259.1 + 48047 0.72 0.493251
Target:  5'- aCCCCGGUGgCcACGGCGGguagcgccgCCGCGCc -3'
miRNA:   3'- -GGGGCUACaGaUGCUGUCa--------GGCGUGu -5'
23302 5' -54.3 NC_005259.1 + 18597 1.11 0.001353
Target:  5'- aCCCCGAUGUCUACGACAGUCCGCACAg -3'
miRNA:   3'- -GGGGCUACAGAUGCUGUCAGGCGUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.