miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23303 5' -56.6 NC_005259.1 + 23666 0.66 0.728793
Target:  5'- -cGGCuGGaccgcCGACCCCGAgcaggcgCACGCa- -3'
miRNA:   3'- guUCGuCCa----GCUGGGGCUa------GUGCGcu -5'
23303 5' -56.6 NC_005259.1 + 56917 0.66 0.718463
Target:  5'- -cAGCAGG-CGugCCCGcgucggugagCAUGCGGu -3'
miRNA:   3'- guUCGUCCaGCugGGGCua--------GUGCGCU- -5'
23303 5' -56.6 NC_005259.1 + 51496 0.66 0.718463
Target:  5'- gGGGaUAGGUCGacGCCgCCGAUCucgACGCGc -3'
miRNA:   3'- gUUC-GUCCAGC--UGG-GGCUAG---UGCGCu -5'
23303 5' -56.6 NC_005259.1 + 4291 0.66 0.708052
Target:  5'- aCGAGCAcGGaccggCGGCCCugCGAUgaGCGCGAc -3'
miRNA:   3'- -GUUCGU-CCa----GCUGGG--GCUAg-UGCGCU- -5'
23303 5' -56.6 NC_005259.1 + 14202 0.66 0.697572
Target:  5'- cCGAGCAGGcCGGgaucaacuaCCCGG-CGCGCGu -3'
miRNA:   3'- -GUUCGUCCaGCUg--------GGGCUaGUGCGCu -5'
23303 5' -56.6 NC_005259.1 + 26028 0.66 0.697572
Target:  5'- gCAAGCGGGUUGGCCagcagcgccgCCGggUugGCc- -3'
miRNA:   3'- -GUUCGUCCAGCUGG----------GGCuaGugCGcu -5'
23303 5' -56.6 NC_005259.1 + 32792 0.66 0.687031
Target:  5'- cCGAGUcguagcccgAGGUCGAUCCCGAcgCAcCGCc- -3'
miRNA:   3'- -GUUCG---------UCCAGCUGGGGCUa-GU-GCGcu -5'
23303 5' -56.6 NC_005259.1 + 68801 0.67 0.67644
Target:  5'- gGGGCGGuGUCgGugCCCGGUaCAUGCu- -3'
miRNA:   3'- gUUCGUC-CAG-CugGGGCUA-GUGCGcu -5'
23303 5' -56.6 NC_005259.1 + 57979 0.67 0.67644
Target:  5'- --cGCcGGgaucgUGACCCCGGUCGagccaGCGAc -3'
miRNA:   3'- guuCGuCCa----GCUGGGGCUAGUg----CGCU- -5'
23303 5' -56.6 NC_005259.1 + 13697 0.67 0.66581
Target:  5'- -uGGCcGGUCGACCCCGccucgaCAC-CGAc -3'
miRNA:   3'- guUCGuCCAGCUGGGGCua----GUGcGCU- -5'
23303 5' -56.6 NC_005259.1 + 6460 0.67 0.644471
Target:  5'- -cGGCAGcGUCGccgguGCCCUGuacccgcUCACGCGGg -3'
miRNA:   3'- guUCGUC-CAGC-----UGGGGCu------AGUGCGCU- -5'
23303 5' -56.6 NC_005259.1 + 18700 0.67 0.63378
Target:  5'- uGAGCAcggcGGUCuGACCUCGAUCAU-CGGg -3'
miRNA:   3'- gUUCGU----CCAG-CUGGGGCUAGUGcGCU- -5'
23303 5' -56.6 NC_005259.1 + 67850 0.68 0.624157
Target:  5'- uGAGCGGGUCGACCaaucggugCCGuaggucucgauccacUCGCGCa- -3'
miRNA:   3'- gUUCGUCCAGCUGG--------GGCu--------------AGUGCGcu -5'
23303 5' -56.6 NC_005259.1 + 67217 0.68 0.623088
Target:  5'- -cGGCgGGGUCGAUgCCGAcCACgGCGGu -3'
miRNA:   3'- guUCG-UCCAGCUGgGGCUaGUG-CGCU- -5'
23303 5' -56.6 NC_005259.1 + 66210 0.68 0.612404
Target:  5'- uCAGGCGcGGUCG-CgCCGAcgcaCACGCGGu -3'
miRNA:   3'- -GUUCGU-CCAGCuGgGGCUa---GUGCGCU- -5'
23303 5' -56.6 NC_005259.1 + 35317 0.68 0.601735
Target:  5'- aGGGCGGuGUguacgCGACCCCGcguagCGCGUGAu -3'
miRNA:   3'- gUUCGUC-CA-----GCUGGGGCua---GUGCGCU- -5'
23303 5' -56.6 NC_005259.1 + 20705 0.68 0.601735
Target:  5'- --cGguGGUCGAagguuucaCCCCGc-CGCGCGAa -3'
miRNA:   3'- guuCguCCAGCU--------GGGGCuaGUGCGCU- -5'
23303 5' -56.6 NC_005259.1 + 18585 0.68 0.595346
Target:  5'- cCGAGCAGacCGACCCCGAUgucuacgacaguccgCACaGCGGu -3'
miRNA:   3'- -GUUCGUCcaGCUGGGGCUA---------------GUG-CGCU- -5'
23303 5' -56.6 NC_005259.1 + 63184 0.69 0.559387
Target:  5'- cCGAGguGaUCGcACCCCGGUCGUGCGc -3'
miRNA:   3'- -GUUCguCcAGC-UGGGGCUAGUGCGCu -5'
23303 5' -56.6 NC_005259.1 + 4225 0.69 0.54892
Target:  5'- uCGAGCAGGccaagcaGGCCCCGccCACGUGc -3'
miRNA:   3'- -GUUCGUCCag-----CUGGGGCuaGUGCGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.