miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23304 5' -57.8 NC_005259.1 + 22788 0.66 0.657033
Target:  5'- cUGUgCAgGUgCUCA-CCGAGGGUGCCg -3'
miRNA:   3'- cACAgGUgCG-GAGUgGGUUCUCGCGG- -5'
23304 5' -57.8 NC_005259.1 + 20159 0.66 0.650633
Target:  5'- gGUGcCCugGCCaccgCGCCCGccgccucggcugacgAGAuCGCCg -3'
miRNA:   3'- -CACaGGugCGGa---GUGGGU---------------UCUcGCGG- -5'
23304 5' -57.8 NC_005259.1 + 33644 0.66 0.634613
Target:  5'- ---aUCGCGCUcgggaaaUCAgCCGAGGGUGCCc -3'
miRNA:   3'- cacaGGUGCGG-------AGUgGGUUCUCGCGG- -5'
23304 5' -57.8 NC_005259.1 + 51747 0.66 0.624997
Target:  5'- -cG-CCACGCuCUCggcagcguugcGCUCGGcGAGCGCCu -3'
miRNA:   3'- caCaGGUGCG-GAG-----------UGGGUU-CUCGCGG- -5'
23304 5' -57.8 NC_005259.1 + 14870 0.66 0.624997
Target:  5'- -gGUUCGCGCU--GCCCGAGc-CGCCg -3'
miRNA:   3'- caCAGGUGCGGagUGGGUUCucGCGG- -5'
23304 5' -57.8 NC_005259.1 + 10645 0.66 0.624997
Target:  5'- -aG-CUugGCCUCGCggucGAGCGCCu -3'
miRNA:   3'- caCaGGugCGGAGUGgguuCUCGCGG- -5'
23304 5' -57.8 NC_005259.1 + 46917 0.66 0.614318
Target:  5'- -aGUCCGCGUgcgccgccgagCUUGCCCGcc-GCGCCg -3'
miRNA:   3'- caCAGGUGCG-----------GAGUGGGUucuCGCGG- -5'
23304 5' -57.8 NC_005259.1 + 68861 0.66 0.614318
Target:  5'- aUGUCgACuuGCC-CGCgCCGGGcGCGCCg -3'
miRNA:   3'- cACAGgUG--CGGaGUG-GGUUCuCGCGG- -5'
23304 5' -57.8 NC_005259.1 + 24165 0.67 0.593013
Target:  5'- aUGUCUACGCCaacCACaCCAAGGuGgGCg -3'
miRNA:   3'- cACAGGUGCGGa--GUG-GGUUCU-CgCGg -5'
23304 5' -57.8 NC_005259.1 + 3286 0.67 0.571831
Target:  5'- -cGUCgC-CGCCUCGCCgGucccucggcGAGCGCUg -3'
miRNA:   3'- caCAG-GuGCGGAGUGGgUu--------CUCGCGG- -5'
23304 5' -57.8 NC_005259.1 + 12589 0.67 0.561307
Target:  5'- ---cCCACGCgUCgACCCAu--GCGCCc -3'
miRNA:   3'- cacaGGUGCGgAG-UGGGUucuCGCGG- -5'
23304 5' -57.8 NC_005259.1 + 35450 0.67 0.540425
Target:  5'- cUGUCCGCGCC-CACCgGcac-CGCCa -3'
miRNA:   3'- cACAGGUGCGGaGUGGgUucucGCGG- -5'
23304 5' -57.8 NC_005259.1 + 9528 0.67 0.540425
Target:  5'- -cGaCCGcCGCCgggUCACCgGAGAGCuGCCc -3'
miRNA:   3'- caCaGGU-GCGG---AGUGGgUUCUCG-CGG- -5'
23304 5' -57.8 NC_005259.1 + 43256 0.68 0.530082
Target:  5'- -cGcCCGCGCCgggUGCCUGAGAguugaccgcaGCGCCc -3'
miRNA:   3'- caCaGGUGCGGa--GUGGGUUCU----------CGCGG- -5'
23304 5' -57.8 NC_005259.1 + 29269 0.68 0.519812
Target:  5'- -cGUCCGCGCCguggaCGAGAuCGCCa -3'
miRNA:   3'- caCAGGUGCGGaguggGUUCUcGCGG- -5'
23304 5' -57.8 NC_005259.1 + 63142 0.68 0.519812
Target:  5'- -aG-CCGCuGuCCUCGCCCAcguuGAGCaGCCg -3'
miRNA:   3'- caCaGGUG-C-GGAGUGGGUu---CUCG-CGG- -5'
23304 5' -57.8 NC_005259.1 + 62545 0.68 0.519812
Target:  5'- -gGUCCGagagauaGCCUCACCgGGcAGCgGCCa -3'
miRNA:   3'- caCAGGUg------CGGAGUGGgUUcUCG-CGG- -5'
23304 5' -57.8 NC_005259.1 + 19884 0.68 0.509621
Target:  5'- -cGcCgACGCCgCGCCCAAGAuGUGCg -3'
miRNA:   3'- caCaGgUGCGGaGUGGGUUCU-CGCGg -5'
23304 5' -57.8 NC_005259.1 + 55801 0.68 0.509621
Target:  5'- -aGUCCuccgACGgCUCACCCucGGGGUagGCCg -3'
miRNA:   3'- caCAGG----UGCgGAGUGGGu-UCUCG--CGG- -5'
23304 5' -57.8 NC_005259.1 + 49070 0.68 0.509621
Target:  5'- -gGUUgGCGCaagggaUCGCUCGAGGGUGUCa -3'
miRNA:   3'- caCAGgUGCGg-----AGUGGGUUCUCGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.