miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23305 3' -53.9 NC_005259.1 + 3313 0.66 0.824623
Target:  5'- aGCGCuGCGucgacgugaGCGcCGGGCAgcUCUGCg -3'
miRNA:   3'- gUGUGuCGC---------UGCcGCCCGUaaAGAUG- -5'
23305 3' -53.9 NC_005259.1 + 27380 0.66 0.796303
Target:  5'- gGCACGGUGAcCGGC-GGCGgugUCgGCa -3'
miRNA:   3'- gUGUGUCGCU-GCCGcCCGUaa-AGaUG- -5'
23305 3' -53.9 NC_005259.1 + 45194 0.67 0.786505
Target:  5'- aGCGCGGUGAUGaCGGGCGagUUCg-- -3'
miRNA:   3'- gUGUGUCGCUGCcGCCCGUa-AAGaug -5'
23305 3' -53.9 NC_005259.1 + 58796 0.68 0.724729
Target:  5'- gAgGCGGUGAuugccuCGGCGGGCucgcgCUGCu -3'
miRNA:   3'- gUgUGUCGCU------GCCGCCCGuaaa-GAUG- -5'
23305 3' -53.9 NC_005259.1 + 13206 0.68 0.724729
Target:  5'- aGCACAGCGgggccaGCGGUGGGCc--UCg-- -3'
miRNA:   3'- gUGUGUCGC------UGCCGCCCGuaaAGaug -5'
23305 3' -53.9 NC_005259.1 + 64904 0.68 0.714042
Target:  5'- gACACgAGCGACGGCGaGCGUgaggaugACg -3'
miRNA:   3'- gUGUG-UCGCUGCCGCcCGUAaaga---UG- -5'
23305 3' -53.9 NC_005259.1 + 3990 0.7 0.615546
Target:  5'- aGCAC-GCGAUGGCGGGCcgcgUCc-- -3'
miRNA:   3'- gUGUGuCGCUGCCGCCCGuaa-AGaug -5'
23305 3' -53.9 NC_005259.1 + 54016 0.7 0.582608
Target:  5'- cCAC-CAGCGACGcuCGGGCGcggugcggUCUGCg -3'
miRNA:   3'- -GUGuGUCGCUGCc-GCCCGUaa------AGAUG- -5'
23305 3' -53.9 NC_005259.1 + 5643 0.71 0.518056
Target:  5'- uGCcCGGCGAggaCGGCGGGCg---CUACa -3'
miRNA:   3'- gUGuGUCGCU---GCCGCCCGuaaaGAUG- -5'
23305 3' -53.9 NC_005259.1 + 200 0.72 0.497147
Target:  5'- gGCGCGuggcGCGACGGCaagcaguucGGGCAgugCUACg -3'
miRNA:   3'- gUGUGU----CGCUGCCG---------CCCGUaaaGAUG- -5'
23305 3' -53.9 NC_005259.1 + 41491 0.72 0.476627
Target:  5'- gCACGaccuCGGCGGUGGCGGGCAgaccguggaUCUGCa -3'
miRNA:   3'- -GUGU----GUCGCUGCCGCCCGUaa-------AGAUG- -5'
23305 3' -53.9 NC_005259.1 + 3094 0.79 0.182232
Target:  5'- cCGCGCAGCGAUGaGCGGGCGgccaUUGCg -3'
miRNA:   3'- -GUGUGUCGCUGC-CGCCCGUaaa-GAUG- -5'
23305 3' -53.9 NC_005259.1 + 17532 1.09 0.001613
Target:  5'- gCACACAGCGACGGCGGGCAUUUCUACu -3'
miRNA:   3'- -GUGUGUCGCUGCCGCCCGUAAAGAUG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.