Results 1 - 20 of 54 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23305 | 5' | -58.4 | NC_005259.1 | + | 64187 | 0.66 | 0.666864 |
Target: 5'- gCGuCGGGAUCUUCCuCGAUGUcgaccucGCCGg -3' miRNA: 3'- -GCuGCUCUAGGAGG-GCUGCGa------CGGCg -5' |
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23305 | 5' | -58.4 | NC_005259.1 | + | 63231 | 0.66 | 0.665821 |
Target: 5'- aGAuCGGGGUCgCUggucagaCCCGACGC-GUCGUa -3' miRNA: 3'- gCU-GCUCUAG-GA-------GGGCUGCGaCGGCG- -5' |
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23305 | 5' | -58.4 | NC_005259.1 | + | 25169 | 0.66 | 0.65642 |
Target: 5'- cCGuuG-GGUCCgaCCCGuACGCcGCCGCc -3' miRNA: 3'- -GCugCuCUAGGa-GGGC-UGCGaCGGCG- -5' |
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23305 | 5' | -58.4 | NC_005259.1 | + | 34427 | 0.66 | 0.65642 |
Target: 5'- -cGCGAGAcgCCcCUCGAUgaGCUGCCGa -3' miRNA: 3'- gcUGCUCUa-GGaGGGCUG--CGACGGCg -5' |
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23305 | 5' | -58.4 | NC_005259.1 | + | 28144 | 0.66 | 0.65642 |
Target: 5'- gCGAUGAGcugCCcggCCuCGACGC-GCUGCc -3' miRNA: 3'- -GCUGCUCua-GGa--GG-GCUGCGaCGGCG- -5' |
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23305 | 5' | -58.4 | NC_005259.1 | + | 14208 | 0.66 | 0.645955 |
Target: 5'- aGGcCGGGAUCaacuaCCCGGCGCgcGUCGUg -3' miRNA: 3'- gCU-GCUCUAGga---GGGCUGCGa-CGGCG- -5' |
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23305 | 5' | -58.4 | NC_005259.1 | + | 35623 | 0.66 | 0.645955 |
Target: 5'- gCGuCGAGuaguucgggCCg-CCGcCGCUGCCGCu -3' miRNA: 3'- -GCuGCUCua-------GGagGGCuGCGACGGCG- -5' |
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23305 | 5' | -58.4 | NC_005259.1 | + | 37522 | 0.66 | 0.635479 |
Target: 5'- cCGACGAGAagaUCgUCgggCCGcCGUUGuuGCg -3' miRNA: 3'- -GCUGCUCU---AGgAG---GGCuGCGACggCG- -5' |
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23305 | 5' | -58.4 | NC_005259.1 | + | 38045 | 0.66 | 0.635479 |
Target: 5'- cCGGCcaccacacccGAUCCUgCCGACGa-GCCGCc -3' miRNA: 3'- -GCUGcu--------CUAGGAgGGCUGCgaCGGCG- -5' |
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23305 | 5' | -58.4 | NC_005259.1 | + | 42931 | 0.66 | 0.635479 |
Target: 5'- aGcAUGAGGcCCUCgCCGugGgCgagGCCGCc -3' miRNA: 3'- gC-UGCUCUaGGAG-GGCugC-Ga--CGGCG- -5' |
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23305 | 5' | -58.4 | NC_005259.1 | + | 20510 | 0.66 | 0.635479 |
Target: 5'- uCGGCGAcggUgUCCCGagcacggguGCGCUGcCCGCa -3' miRNA: 3'- -GCUGCUcuaGgAGGGC---------UGCGAC-GGCG- -5' |
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23305 | 5' | -58.4 | NC_005259.1 | + | 45368 | 0.66 | 0.629191 |
Target: 5'- uCGACGGGGUUUUgCCCGAggaauuucucgggguCGCcGCCGa -3' miRNA: 3'- -GCUGCUCUAGGA-GGGCU---------------GCGaCGGCg -5' |
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23305 | 5' | -58.4 | NC_005259.1 | + | 48529 | 0.66 | 0.625 |
Target: 5'- uGcCGA---CUUCUCGGCGCUGUCGCc -3' miRNA: 3'- gCuGCUcuaGGAGGGCUGCGACGGCG- -5' |
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23305 | 5' | -58.4 | NC_005259.1 | + | 6346 | 0.66 | 0.625 |
Target: 5'- aCGACGGGGUgCCguacgUgCGcACGUUGUCGCc -3' miRNA: 3'- -GCUGCUCUA-GGa----GgGC-UGCGACGGCG- -5' |
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23305 | 5' | -58.4 | NC_005259.1 | + | 17353 | 0.66 | 0.625 |
Target: 5'- cCGuCGAGGUCggcggCUCGGCGCUGgUCGUg -3' miRNA: 3'- -GCuGCUCUAGga---GGGCUGCGAC-GGCG- -5' |
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23305 | 5' | -58.4 | NC_005259.1 | + | 27546 | 0.67 | 0.597802 |
Target: 5'- aCGGCGGGAuguugcggccaccgaUCCauaCCGGCGggaUGCCGUa -3' miRNA: 3'- -GCUGCUCU---------------AGGag-GGCUGCg--ACGGCG- -5' |
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23305 | 5' | -58.4 | NC_005259.1 | + | 34817 | 0.67 | 0.59363 |
Target: 5'- uCGACGuAGAUCCcauaagcuUCCUGAUag-GCCGCc -3' miRNA: 3'- -GCUGC-UCUAGG--------AGGGCUGcgaCGGCG- -5' |
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23305 | 5' | -58.4 | NC_005259.1 | + | 58691 | 0.67 | 0.59363 |
Target: 5'- -cGCGGGGUCggCUCGuCGCcGCCGCc -3' miRNA: 3'- gcUGCUCUAGgaGGGCuGCGaCGGCG- -5' |
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23305 | 5' | -58.4 | NC_005259.1 | + | 8070 | 0.67 | 0.59363 |
Target: 5'- cCGAcauCGAGAUCgUgCCG-CGCUGgCGUg -3' miRNA: 3'- -GCU---GCUCUAGgAgGGCuGCGACgGCG- -5' |
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23305 | 5' | -58.4 | NC_005259.1 | + | 23220 | 0.67 | 0.583222 |
Target: 5'- gGACGGGuaccGUCCgCUCGACGCcaaUGCCa- -3' miRNA: 3'- gCUGCUC----UAGGaGGGCUGCG---ACGGcg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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