miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23305 5' -58.4 NC_005259.1 + 64187 0.66 0.666864
Target:  5'- gCGuCGGGAUCUUCCuCGAUGUcgaccucGCCGg -3'
miRNA:   3'- -GCuGCUCUAGGAGG-GCUGCGa------CGGCg -5'
23305 5' -58.4 NC_005259.1 + 63231 0.66 0.665821
Target:  5'- aGAuCGGGGUCgCUggucagaCCCGACGC-GUCGUa -3'
miRNA:   3'- gCU-GCUCUAG-GA-------GGGCUGCGaCGGCG- -5'
23305 5' -58.4 NC_005259.1 + 25169 0.66 0.65642
Target:  5'- cCGuuG-GGUCCgaCCCGuACGCcGCCGCc -3'
miRNA:   3'- -GCugCuCUAGGa-GGGC-UGCGaCGGCG- -5'
23305 5' -58.4 NC_005259.1 + 34427 0.66 0.65642
Target:  5'- -cGCGAGAcgCCcCUCGAUgaGCUGCCGa -3'
miRNA:   3'- gcUGCUCUa-GGaGGGCUG--CGACGGCg -5'
23305 5' -58.4 NC_005259.1 + 28144 0.66 0.65642
Target:  5'- gCGAUGAGcugCCcggCCuCGACGC-GCUGCc -3'
miRNA:   3'- -GCUGCUCua-GGa--GG-GCUGCGaCGGCG- -5'
23305 5' -58.4 NC_005259.1 + 14208 0.66 0.645955
Target:  5'- aGGcCGGGAUCaacuaCCCGGCGCgcGUCGUg -3'
miRNA:   3'- gCU-GCUCUAGga---GGGCUGCGa-CGGCG- -5'
23305 5' -58.4 NC_005259.1 + 35623 0.66 0.645955
Target:  5'- gCGuCGAGuaguucgggCCg-CCGcCGCUGCCGCu -3'
miRNA:   3'- -GCuGCUCua-------GGagGGCuGCGACGGCG- -5'
23305 5' -58.4 NC_005259.1 + 37522 0.66 0.635479
Target:  5'- cCGACGAGAagaUCgUCgggCCGcCGUUGuuGCg -3'
miRNA:   3'- -GCUGCUCU---AGgAG---GGCuGCGACggCG- -5'
23305 5' -58.4 NC_005259.1 + 38045 0.66 0.635479
Target:  5'- cCGGCcaccacacccGAUCCUgCCGACGa-GCCGCc -3'
miRNA:   3'- -GCUGcu--------CUAGGAgGGCUGCgaCGGCG- -5'
23305 5' -58.4 NC_005259.1 + 42931 0.66 0.635479
Target:  5'- aGcAUGAGGcCCUCgCCGugGgCgagGCCGCc -3'
miRNA:   3'- gC-UGCUCUaGGAG-GGCugC-Ga--CGGCG- -5'
23305 5' -58.4 NC_005259.1 + 20510 0.66 0.635479
Target:  5'- uCGGCGAcggUgUCCCGagcacggguGCGCUGcCCGCa -3'
miRNA:   3'- -GCUGCUcuaGgAGGGC---------UGCGAC-GGCG- -5'
23305 5' -58.4 NC_005259.1 + 45368 0.66 0.629191
Target:  5'- uCGACGGGGUUUUgCCCGAggaauuucucgggguCGCcGCCGa -3'
miRNA:   3'- -GCUGCUCUAGGA-GGGCU---------------GCGaCGGCg -5'
23305 5' -58.4 NC_005259.1 + 48529 0.66 0.625
Target:  5'- uGcCGA---CUUCUCGGCGCUGUCGCc -3'
miRNA:   3'- gCuGCUcuaGGAGGGCUGCGACGGCG- -5'
23305 5' -58.4 NC_005259.1 + 6346 0.66 0.625
Target:  5'- aCGACGGGGUgCCguacgUgCGcACGUUGUCGCc -3'
miRNA:   3'- -GCUGCUCUA-GGa----GgGC-UGCGACGGCG- -5'
23305 5' -58.4 NC_005259.1 + 17353 0.66 0.625
Target:  5'- cCGuCGAGGUCggcggCUCGGCGCUGgUCGUg -3'
miRNA:   3'- -GCuGCUCUAGga---GGGCUGCGAC-GGCG- -5'
23305 5' -58.4 NC_005259.1 + 27546 0.67 0.597802
Target:  5'- aCGGCGGGAuguugcggccaccgaUCCauaCCGGCGggaUGCCGUa -3'
miRNA:   3'- -GCUGCUCU---------------AGGag-GGCUGCg--ACGGCG- -5'
23305 5' -58.4 NC_005259.1 + 34817 0.67 0.59363
Target:  5'- uCGACGuAGAUCCcauaagcuUCCUGAUag-GCCGCc -3'
miRNA:   3'- -GCUGC-UCUAGG--------AGGGCUGcgaCGGCG- -5'
23305 5' -58.4 NC_005259.1 + 58691 0.67 0.59363
Target:  5'- -cGCGGGGUCggCUCGuCGCcGCCGCc -3'
miRNA:   3'- gcUGCUCUAGgaGGGCuGCGaCGGCG- -5'
23305 5' -58.4 NC_005259.1 + 8070 0.67 0.59363
Target:  5'- cCGAcauCGAGAUCgUgCCG-CGCUGgCGUg -3'
miRNA:   3'- -GCU---GCUCUAGgAgGGCuGCGACgGCG- -5'
23305 5' -58.4 NC_005259.1 + 23220 0.67 0.583222
Target:  5'- gGACGGGuaccGUCCgCUCGACGCcaaUGCCa- -3'
miRNA:   3'- gCUGCUC----UAGGaGGGCUGCG---ACGGcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.