miRNA display CGI


Results 1 - 20 of 23 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23307 5' -60.4 NC_005259.1 + 38982 0.66 0.503555
Target:  5'- aUCGCggauACCCUGCCCAgccucguugagcGCGGUGaCCa -3'
miRNA:   3'- cAGCG----UGGGGUGGGUau----------CGCCAC-GGa -5'
23307 5' -60.4 NC_005259.1 + 26394 0.66 0.477879
Target:  5'- cUCGCGauUCCgACgCCGggcgcGGCGGUGCCg -3'
miRNA:   3'- cAGCGU--GGGgUG-GGUa----UCGCCACGGa -5'
23307 5' -60.4 NC_005259.1 + 37261 0.66 0.468176
Target:  5'- cGUUGCcagGCUugaggCCGCCCGgcaggacuugcaUGGCGGUGCCc -3'
miRNA:   3'- -CAGCG---UGG-----GGUGGGU------------AUCGCCACGGa -5'
23307 5' -60.4 NC_005259.1 + 17674 0.67 0.449081
Target:  5'- cGUCGa--CUCGCCCcgAG-GGUGCCUa -3'
miRNA:   3'- -CAGCgugGGGUGGGuaUCgCCACGGA- -5'
23307 5' -60.4 NC_005259.1 + 35791 0.67 0.439696
Target:  5'- uGUCGaCGCCgCGCCuCAacaGGaCGGUGCCg -3'
miRNA:   3'- -CAGC-GUGGgGUGG-GUa--UC-GCCACGGa -5'
23307 5' -60.4 NC_005259.1 + 50963 0.67 0.412229
Target:  5'- cUCGCGuggcugUCCCACgCGgcgAGCGGUGUCg -3'
miRNA:   3'- cAGCGU------GGGGUGgGUa--UCGCCACGGa -5'
23307 5' -60.4 NC_005259.1 + 37651 0.67 0.412229
Target:  5'- -cCGCACCgCCGCCgccgcCGGUGCCg -3'
miRNA:   3'- caGCGUGG-GGUGGguaucGCCACGGa -5'
23307 5' -60.4 NC_005259.1 + 50395 0.67 0.412229
Target:  5'- uGUCGCGgCUCGCCgAgcGCgccGGUGCCUu -3'
miRNA:   3'- -CAGCGUgGGGUGGgUauCG---CCACGGA- -5'
23307 5' -60.4 NC_005259.1 + 37036 0.67 0.403312
Target:  5'- uGUCGaucuuggugccCGCCaCCGCCCAcggcGGCGGUGUCc -3'
miRNA:   3'- -CAGC-----------GUGG-GGUGGGUa---UCGCCACGGa -5'
23307 5' -60.4 NC_005259.1 + 41619 0.68 0.394518
Target:  5'- aUCGCGaggCUgACCaugGUGGCGGUGCCg -3'
miRNA:   3'- cAGCGUg--GGgUGGg--UAUCGCCACGGa -5'
23307 5' -60.4 NC_005259.1 + 39388 0.68 0.368892
Target:  5'- uUCGuCACgcugagcuuggUCCACCCcgaGGCGGUGCCg -3'
miRNA:   3'- cAGC-GUG-----------GGGUGGGua-UCGCCACGGa -5'
23307 5' -60.4 NC_005259.1 + 4651 0.68 0.368892
Target:  5'- -gCGCACCgCGCCUAcgGGCacGGUGUCUg -3'
miRNA:   3'- caGCGUGGgGUGGGUa-UCG--CCACGGA- -5'
23307 5' -60.4 NC_005259.1 + 46882 0.69 0.336541
Target:  5'- aUCGCGCCgCCGCCCGcgaugAGCGcccGCCg -3'
miRNA:   3'- cAGCGUGG-GGUGGGUa----UCGCca-CGGa -5'
23307 5' -60.4 NC_005259.1 + 26799 0.69 0.328015
Target:  5'- --aGCGCCgCCGCCCGguUGGCcgguaccggcgguGGUGCCg -3'
miRNA:   3'- cagCGUGG-GGUGGGU--AUCG-------------CCACGGa -5'
23307 5' -60.4 NC_005259.1 + 64339 0.69 0.321158
Target:  5'- cUCGgACUgCCACUCGUugcgGGCGGUGCCc -3'
miRNA:   3'- cAGCgUGG-GGUGGGUA----UCGCCACGGa -5'
23307 5' -60.4 NC_005259.1 + 43969 0.69 0.321158
Target:  5'- -cCGcCGCCUgACCgAgGGCGGUGCCg -3'
miRNA:   3'- caGC-GUGGGgUGGgUaUCGCCACGGa -5'
23307 5' -60.4 NC_005259.1 + 14324 0.69 0.321158
Target:  5'- cUCGaCGCCgCCGCCCGcguGCGG-GCCg -3'
miRNA:   3'- cAGC-GUGG-GGUGGGUau-CGCCaCGGa -5'
23307 5' -60.4 NC_005259.1 + 55722 0.7 0.296229
Target:  5'- --aGCACCUCGCCCuuguuggcaagcuUGGUGGUGUCg -3'
miRNA:   3'- cagCGUGGGGUGGGu------------AUCGCCACGGa -5'
23307 5' -60.4 NC_005259.1 + 7671 0.7 0.271501
Target:  5'- --aGCGCCCCGCCuCGUGG-GGUGgCCc -3'
miRNA:   3'- cagCGUGGGGUGG-GUAUCgCCAC-GGa -5'
23307 5' -60.4 NC_005259.1 + 47925 0.72 0.22252
Target:  5'- cGUCGCcgagGCCCUggaaGCCgAUgacGGCGGUGCCg -3'
miRNA:   3'- -CAGCG----UGGGG----UGGgUA---UCGCCACGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.