Results 1 - 20 of 23 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23307 | 5' | -60.4 | NC_005259.1 | + | 38982 | 0.66 | 0.503555 |
Target: 5'- aUCGCggauACCCUGCCCAgccucguugagcGCGGUGaCCa -3' miRNA: 3'- cAGCG----UGGGGUGGGUau----------CGCCAC-GGa -5' |
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23307 | 5' | -60.4 | NC_005259.1 | + | 26394 | 0.66 | 0.477879 |
Target: 5'- cUCGCGauUCCgACgCCGggcgcGGCGGUGCCg -3' miRNA: 3'- cAGCGU--GGGgUG-GGUa----UCGCCACGGa -5' |
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23307 | 5' | -60.4 | NC_005259.1 | + | 37261 | 0.66 | 0.468176 |
Target: 5'- cGUUGCcagGCUugaggCCGCCCGgcaggacuugcaUGGCGGUGCCc -3' miRNA: 3'- -CAGCG---UGG-----GGUGGGU------------AUCGCCACGGa -5' |
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23307 | 5' | -60.4 | NC_005259.1 | + | 17674 | 0.67 | 0.449081 |
Target: 5'- cGUCGa--CUCGCCCcgAG-GGUGCCUa -3' miRNA: 3'- -CAGCgugGGGUGGGuaUCgCCACGGA- -5' |
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23307 | 5' | -60.4 | NC_005259.1 | + | 35791 | 0.67 | 0.439696 |
Target: 5'- uGUCGaCGCCgCGCCuCAacaGGaCGGUGCCg -3' miRNA: 3'- -CAGC-GUGGgGUGG-GUa--UC-GCCACGGa -5' |
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23307 | 5' | -60.4 | NC_005259.1 | + | 50963 | 0.67 | 0.412229 |
Target: 5'- cUCGCGuggcugUCCCACgCGgcgAGCGGUGUCg -3' miRNA: 3'- cAGCGU------GGGGUGgGUa--UCGCCACGGa -5' |
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23307 | 5' | -60.4 | NC_005259.1 | + | 37651 | 0.67 | 0.412229 |
Target: 5'- -cCGCACCgCCGCCgccgcCGGUGCCg -3' miRNA: 3'- caGCGUGG-GGUGGguaucGCCACGGa -5' |
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23307 | 5' | -60.4 | NC_005259.1 | + | 50395 | 0.67 | 0.412229 |
Target: 5'- uGUCGCGgCUCGCCgAgcGCgccGGUGCCUu -3' miRNA: 3'- -CAGCGUgGGGUGGgUauCG---CCACGGA- -5' |
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23307 | 5' | -60.4 | NC_005259.1 | + | 37036 | 0.67 | 0.403312 |
Target: 5'- uGUCGaucuuggugccCGCCaCCGCCCAcggcGGCGGUGUCc -3' miRNA: 3'- -CAGC-----------GUGG-GGUGGGUa---UCGCCACGGa -5' |
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23307 | 5' | -60.4 | NC_005259.1 | + | 41619 | 0.68 | 0.394518 |
Target: 5'- aUCGCGaggCUgACCaugGUGGCGGUGCCg -3' miRNA: 3'- cAGCGUg--GGgUGGg--UAUCGCCACGGa -5' |
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23307 | 5' | -60.4 | NC_005259.1 | + | 39388 | 0.68 | 0.368892 |
Target: 5'- uUCGuCACgcugagcuuggUCCACCCcgaGGCGGUGCCg -3' miRNA: 3'- cAGC-GUG-----------GGGUGGGua-UCGCCACGGa -5' |
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23307 | 5' | -60.4 | NC_005259.1 | + | 4651 | 0.68 | 0.368892 |
Target: 5'- -gCGCACCgCGCCUAcgGGCacGGUGUCUg -3' miRNA: 3'- caGCGUGGgGUGGGUa-UCG--CCACGGA- -5' |
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23307 | 5' | -60.4 | NC_005259.1 | + | 46882 | 0.69 | 0.336541 |
Target: 5'- aUCGCGCCgCCGCCCGcgaugAGCGcccGCCg -3' miRNA: 3'- cAGCGUGG-GGUGGGUa----UCGCca-CGGa -5' |
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23307 | 5' | -60.4 | NC_005259.1 | + | 26799 | 0.69 | 0.328015 |
Target: 5'- --aGCGCCgCCGCCCGguUGGCcgguaccggcgguGGUGCCg -3' miRNA: 3'- cagCGUGG-GGUGGGU--AUCG-------------CCACGGa -5' |
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23307 | 5' | -60.4 | NC_005259.1 | + | 64339 | 0.69 | 0.321158 |
Target: 5'- cUCGgACUgCCACUCGUugcgGGCGGUGCCc -3' miRNA: 3'- cAGCgUGG-GGUGGGUA----UCGCCACGGa -5' |
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23307 | 5' | -60.4 | NC_005259.1 | + | 43969 | 0.69 | 0.321158 |
Target: 5'- -cCGcCGCCUgACCgAgGGCGGUGCCg -3' miRNA: 3'- caGC-GUGGGgUGGgUaUCGCCACGGa -5' |
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23307 | 5' | -60.4 | NC_005259.1 | + | 14324 | 0.69 | 0.321158 |
Target: 5'- cUCGaCGCCgCCGCCCGcguGCGG-GCCg -3' miRNA: 3'- cAGC-GUGG-GGUGGGUau-CGCCaCGGa -5' |
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23307 | 5' | -60.4 | NC_005259.1 | + | 55722 | 0.7 | 0.296229 |
Target: 5'- --aGCACCUCGCCCuuguuggcaagcuUGGUGGUGUCg -3' miRNA: 3'- cagCGUGGGGUGGGu------------AUCGCCACGGa -5' |
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23307 | 5' | -60.4 | NC_005259.1 | + | 7671 | 0.7 | 0.271501 |
Target: 5'- --aGCGCCCCGCCuCGUGG-GGUGgCCc -3' miRNA: 3'- cagCGUGGGGUGG-GUAUCgCCAC-GGa -5' |
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23307 | 5' | -60.4 | NC_005259.1 | + | 47925 | 0.72 | 0.22252 |
Target: 5'- cGUCGCcgagGCCCUggaaGCCgAUgacGGCGGUGCCg -3' miRNA: 3'- -CAGCG----UGGGG----UGGgUA---UCGCCACGGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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