miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23308 3' -61.7 NC_005259.1 + 9124 0.66 0.474597
Target:  5'- -cACGC-GCCCcgguacgggcaGCCGugcucGUGCCCGUCg -3'
miRNA:   3'- ccUGCGuCGGG-----------UGGCuc---CACGGGCAG- -5'
23308 3' -61.7 NC_005259.1 + 37229 0.66 0.474597
Target:  5'- gGGGCGCuGGCCCguGCCGGauuGGcUGCCgcCGUUg -3'
miRNA:   3'- -CCUGCG-UCGGG--UGGCU---CC-ACGG--GCAG- -5'
23308 3' -61.7 NC_005259.1 + 44497 0.66 0.474597
Target:  5'- uGACGUAG---ACCGGGGUGCCCu-- -3'
miRNA:   3'- cCUGCGUCgggUGGCUCCACGGGcag -5'
23308 3' -61.7 NC_005259.1 + 41013 0.66 0.465124
Target:  5'- cGGGC-CGGUCCACaguGuGGUGCCgcUGUCa -3'
miRNA:   3'- -CCUGcGUCGGGUGg--CuCCACGG--GCAG- -5'
23308 3' -61.7 NC_005259.1 + 39902 0.66 0.465124
Target:  5'- cGcCGCcGCCCGCCucgauccgucGAGG-GCCgCGUCg -3'
miRNA:   3'- cCuGCGuCGGGUGG----------CUCCaCGG-GCAG- -5'
23308 3' -61.7 NC_005259.1 + 20399 0.66 0.465124
Target:  5'- cGACGUAGCaagggCAUCGAGGUcuaCCCGgUCa -3'
miRNA:   3'- cCUGCGUCGg----GUGGCUCCAc--GGGC-AG- -5'
23308 3' -61.7 NC_005259.1 + 290 0.66 0.45482
Target:  5'- -uACGCGGCCUcgcgcugaucucgACCGGGG-GUgCGUCc -3'
miRNA:   3'- ccUGCGUCGGG-------------UGGCUCCaCGgGCAG- -5'
23308 3' -61.7 NC_005259.1 + 55030 0.66 0.446481
Target:  5'- cGGCaCGGgCUGCCGAGGUGCuuGcCu -3'
miRNA:   3'- cCUGcGUCgGGUGGCUCCACGggCaG- -5'
23308 3' -61.7 NC_005259.1 + 62196 0.66 0.446481
Target:  5'- -cACGCAcacggucaccGCUCACaCGAGGUGCCuCGa- -3'
miRNA:   3'- ccUGCGU----------CGGGUG-GCUCCACGG-GCag -5'
23308 3' -61.7 NC_005259.1 + 13464 0.66 0.437316
Target:  5'- cGGCGCugguGCUCACCGcGcUGCCCGa- -3'
miRNA:   3'- cCUGCGu---CGGGUGGCuCcACGGGCag -5'
23308 3' -61.7 NC_005259.1 + 12542 0.66 0.428261
Target:  5'- -aGCG-AGCCCcacggcauuGCCGGGGUgGCCCGcCa -3'
miRNA:   3'- ccUGCgUCGGG---------UGGCUCCA-CGGGCaG- -5'
23308 3' -61.7 NC_005259.1 + 60425 0.67 0.419317
Target:  5'- cGGGgGUGGCCCACgGGGcGgccacGCCCGa- -3'
miRNA:   3'- -CCUgCGUCGGGUGgCUC-Ca----CGGGCag -5'
23308 3' -61.7 NC_005259.1 + 41402 0.67 0.410487
Target:  5'- uGGCGCG--CCGCuCGGGGUGCCCa-- -3'
miRNA:   3'- cCUGCGUcgGGUG-GCUCCACGGGcag -5'
23308 3' -61.7 NC_005259.1 + 34872 0.67 0.401774
Target:  5'- cGuCGguGCCgGaCCGGGGUGCCuCGg- -3'
miRNA:   3'- cCuGCguCGGgU-GGCUCCACGG-GCag -5'
23308 3' -61.7 NC_005259.1 + 60575 0.67 0.401774
Target:  5'- cGGucAgGCGGCCCACgGcgagucGGGUG-CCGUCa -3'
miRNA:   3'- -CC--UgCGUCGGGUGgC------UCCACgGGCAG- -5'
23308 3' -61.7 NC_005259.1 + 17456 0.67 0.39318
Target:  5'- cGAUGUGccaccGCCCACCGuGGUgacGCCCGg- -3'
miRNA:   3'- cCUGCGU-----CGGGUGGCuCCA---CGGGCag -5'
23308 3' -61.7 NC_005259.1 + 68558 0.67 0.39318
Target:  5'- gGGugGUugAGCCaACCGAGGUGgacCUCGUa -3'
miRNA:   3'- -CCugCG--UCGGgUGGCUCCAC---GGGCAg -5'
23308 3' -61.7 NC_005259.1 + 739 0.67 0.39318
Target:  5'- cGGCGguGCCUacGCCGccGGUGCCuaccgCGUCc -3'
miRNA:   3'- cCUGCguCGGG--UGGCu-CCACGG-----GCAG- -5'
23308 3' -61.7 NC_005259.1 + 67085 0.67 0.383864
Target:  5'- uGACGCcgaccuuGGCCCAuugguCCGAGGUguacuGCCCGc- -3'
miRNA:   3'- cCUGCG-------UCGGGU-----GGCUCCA-----CGGGCag -5'
23308 3' -61.7 NC_005259.1 + 68339 0.67 0.376353
Target:  5'- gGGGCucaGCGGCUCAUCGGGGUaGCUCaUCc -3'
miRNA:   3'- -CCUG---CGUCGGGUGGCUCCA-CGGGcAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.