miRNA display CGI


Results 1 - 20 of 33 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23308 5' -57.4 NC_005259.1 + 16442 1.06 0.001316
Target:  5'- cCAAACCGGGCACCGUCGGCAUCGGUAc -3'
miRNA:   3'- -GUUUGGCCCGUGGCAGCCGUAGCCAU- -5'
23308 5' -57.4 NC_005259.1 + 57363 0.74 0.226955
Target:  5'- gAGAaCGGGCACCGUgGGCAgucUCGGg- -3'
miRNA:   3'- gUUUgGCCCGUGGCAgCCGU---AGCCau -5'
23308 5' -57.4 NC_005259.1 + 23281 0.74 0.257554
Target:  5'- aAGACCGGGCGCgGUgguugGGUAUCGGg- -3'
miRNA:   3'- gUUUGGCCCGUGgCAg----CCGUAGCCau -5'
23308 5' -57.4 NC_005259.1 + 60533 0.72 0.297906
Target:  5'- cCGGGCCGGGaCGCagccgcuCGUCGGCAUgccCGGUGc -3'
miRNA:   3'- -GUUUGGCCC-GUG-------GCAGCCGUA---GCCAU- -5'
23308 5' -57.4 NC_005259.1 + 48195 0.72 0.29863
Target:  5'- uCGGACCGGGCauGCCGUCGuaGU-GGUAc -3'
miRNA:   3'- -GUUUGGCCCG--UGGCAGCcgUAgCCAU- -5'
23308 5' -57.4 NC_005259.1 + 61068 0.72 0.29863
Target:  5'- --uGCCGGGCAucggcauaggcgUCGUCGGCcUCGGg- -3'
miRNA:   3'- guuUGGCCCGU------------GGCAGCCGuAGCCau -5'
23308 5' -57.4 NC_005259.1 + 34183 0.72 0.29863
Target:  5'- aCAcACCGGGCAgUGgcUCGGCAaCGGUGu -3'
miRNA:   3'- -GUuUGGCCCGUgGC--AGCCGUaGCCAU- -5'
23308 5' -57.4 NC_005259.1 + 58967 0.72 0.328731
Target:  5'- gCAggUCGGGCAgcUCGUCGGCGaCGGc- -3'
miRNA:   3'- -GUuuGGCCCGU--GGCAGCCGUaGCCau -5'
23308 5' -57.4 NC_005259.1 + 18724 0.71 0.369424
Target:  5'- --cAUCGGGcCGCC--CGGCAUCGGUAa -3'
miRNA:   3'- guuUGGCCC-GUGGcaGCCGUAGCCAU- -5'
23308 5' -57.4 NC_005259.1 + 68629 0.69 0.45088
Target:  5'- -cAGCCGGGCACCcUCGGCgaacaccaGUCGa-- -3'
miRNA:   3'- guUUGGCCCGUGGcAGCCG--------UAGCcau -5'
23308 5' -57.4 NC_005259.1 + 53012 0.69 0.460531
Target:  5'- -cGACUGGGCGCUGcggUGGCGUCGa-- -3'
miRNA:   3'- guUUGGCCCGUGGCa--GCCGUAGCcau -5'
23308 5' -57.4 NC_005259.1 + 49556 0.69 0.490113
Target:  5'- --uGCCGGGCuguUCGUCGGUcgUGGc- -3'
miRNA:   3'- guuUGGCCCGu--GGCAGCCGuaGCCau -5'
23308 5' -57.4 NC_005259.1 + 60282 0.69 0.490113
Target:  5'- --uGCCGGGCgGCCaUCGuCGUCGGUGc -3'
miRNA:   3'- guuUGGCCCG-UGGcAGCcGUAGCCAU- -5'
23308 5' -57.4 NC_005259.1 + 40136 0.68 0.500171
Target:  5'- ----gCGGGCgagcucGCCGUCGGuUGUCGGUGc -3'
miRNA:   3'- guuugGCCCG------UGGCAGCC-GUAGCCAU- -5'
23308 5' -57.4 NC_005259.1 + 57310 0.68 0.510318
Target:  5'- --cAUCGaGCACCGgCGGUGUCGGUGu -3'
miRNA:   3'- guuUGGCcCGUGGCaGCCGUAGCCAU- -5'
23308 5' -57.4 NC_005259.1 + 54225 0.68 0.541248
Target:  5'- --uACCGGGCAUaggGUCGGUccuccuaaGUCGGg- -3'
miRNA:   3'- guuUGGCCCGUGg--CAGCCG--------UAGCCau -5'
23308 5' -57.4 NC_005259.1 + 9706 0.68 0.541248
Target:  5'- --cACUGGGCACCGUCcucgGGC--CGGUc -3'
miRNA:   3'- guuUGGCCCGUGGCAG----CCGuaGCCAu -5'
23308 5' -57.4 NC_005259.1 + 27387 0.68 0.541248
Target:  5'- -uGACCGgcGGCGgUGUCGGCAgcggcggcagcUCGGUGc -3'
miRNA:   3'- guUUGGC--CCGUgGCAGCCGU-----------AGCCAU- -5'
23308 5' -57.4 NC_005259.1 + 53917 0.67 0.562213
Target:  5'- gAAACCgacGGGCAgaUCGUUGGCGUCGa-- -3'
miRNA:   3'- gUUUGG---CCCGU--GGCAGCCGUAGCcau -5'
23308 5' -57.4 NC_005259.1 + 61914 0.67 0.562213
Target:  5'- --cGCCGGuCGUCGUCGGCAgcUCGGUc -3'
miRNA:   3'- guuUGGCCcGUGGCAGCCGU--AGCCAu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.