miRNA display CGI


Results 21 - 33 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23308 5' -57.4 NC_005259.1 + 53012 0.69 0.460531
Target:  5'- -cGACUGGGCGCUGcggUGGCGUCGa-- -3'
miRNA:   3'- guUUGGCCCGUGGCa--GCCGUAGCcau -5'
23308 5' -57.4 NC_005259.1 + 53917 0.67 0.562213
Target:  5'- gAAACCgacGGGCAgaUCGUUGGCGUCGa-- -3'
miRNA:   3'- gUUUGG---CCCGU--GGCAGCCGUAGCcau -5'
23308 5' -57.4 NC_005259.1 + 54225 0.68 0.541248
Target:  5'- --uACCGGGCAUaggGUCGGUccuccuaaGUCGGg- -3'
miRNA:   3'- guuUGGCCCGUGg--CAGCCG--------UAGCCau -5'
23308 5' -57.4 NC_005259.1 + 57310 0.68 0.510318
Target:  5'- --cAUCGaGCACCGgCGGUGUCGGUGu -3'
miRNA:   3'- guuUGGCcCGUGGCaGCCGUAGCCAU- -5'
23308 5' -57.4 NC_005259.1 + 57363 0.74 0.226955
Target:  5'- gAGAaCGGGCACCGUgGGCAgucUCGGg- -3'
miRNA:   3'- gUUUgGCCCGUGGCAgCCGU---AGCCau -5'
23308 5' -57.4 NC_005259.1 + 58967 0.72 0.328731
Target:  5'- gCAggUCGGGCAgcUCGUCGGCGaCGGc- -3'
miRNA:   3'- -GUuuGGCCCGU--GGCAGCCGUaGCCau -5'
23308 5' -57.4 NC_005259.1 + 60282 0.69 0.490113
Target:  5'- --uGCCGGGCgGCCaUCGuCGUCGGUGc -3'
miRNA:   3'- guuUGGCCCG-UGGcAGCcGUAGCCAU- -5'
23308 5' -57.4 NC_005259.1 + 60533 0.72 0.297906
Target:  5'- cCGGGCCGGGaCGCagccgcuCGUCGGCAUgccCGGUGc -3'
miRNA:   3'- -GUUUGGCCC-GUG-------GCAGCCGUA---GCCAU- -5'
23308 5' -57.4 NC_005259.1 + 61068 0.72 0.29863
Target:  5'- --uGCCGGGCAucggcauaggcgUCGUCGGCcUCGGg- -3'
miRNA:   3'- guuUGGCCCGU------------GGCAGCCGuAGCCau -5'
23308 5' -57.4 NC_005259.1 + 61914 0.67 0.562213
Target:  5'- --cGCCGGuCGUCGUCGGCAgcUCGGUc -3'
miRNA:   3'- guuUGGCCcGUGGCAGCCGU--AGCCAu -5'
23308 5' -57.4 NC_005259.1 + 68303 0.66 0.626145
Target:  5'- gGGAUCGGGCG-CGUCcGGCGaCGGg- -3'
miRNA:   3'- gUUUGGCCCGUgGCAG-CCGUaGCCau -5'
23308 5' -57.4 NC_005259.1 + 68629 0.69 0.45088
Target:  5'- -cAGCCGGGCACCcUCGGCgaacaccaGUCGa-- -3'
miRNA:   3'- guUUGGCCCGUGGcAGCCG--------UAGCcau -5'
23308 5' -57.4 NC_005259.1 + 68787 0.66 0.636868
Target:  5'- gCAggUCGuaCGCCGgggCGGUGUCGGUGc -3'
miRNA:   3'- -GUuuGGCccGUGGCa--GCCGUAGCCAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.