miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23309 3' -54.7 NC_005259.1 + 21702 0.66 0.802687
Target:  5'- uUCGAGgacGGGUCAgacGaCCGCCCUGCCg- -3'
miRNA:   3'- -GGUUC---UCUAGUa--CaGGUGGGGCGGac -5'
23309 3' -54.7 NC_005259.1 + 28212 0.66 0.793155
Target:  5'- uCCGuAGAcGGUCGUG-CCGCCaCCGUCg- -3'
miRNA:   3'- -GGU-UCU-CUAGUACaGGUGG-GGCGGac -5'
23309 3' -54.7 NC_005259.1 + 12903 0.67 0.772618
Target:  5'- aCCGucGGAUCAUGaCCAacaaccuCCCCGCCc- -3'
miRNA:   3'- -GGUucUCUAGUACaGGU-------GGGGCGGac -5'
23309 3' -54.7 NC_005259.1 + 40201 0.67 0.753499
Target:  5'- uCCGAGAG-UCAUGUUCugCUgcuUGCCg- -3'
miRNA:   3'- -GGUUCUCuAGUACAGGugGG---GCGGac -5'
23309 3' -54.7 NC_005259.1 + 18236 0.67 0.743257
Target:  5'- aCCGgagacGGAGAUUucgagcUGcCCGCCgCGCCUGa -3'
miRNA:   3'- -GGU-----UCUCUAGu-----ACaGGUGGgGCGGAC- -5'
23309 3' -54.7 NC_005259.1 + 3430 0.67 0.743257
Target:  5'- gCCGAGAaagGAUCGaaaUGUCUAccucCCCCGCgUGc -3'
miRNA:   3'- -GGUUCU---CUAGU---ACAGGU----GGGGCGgAC- -5'
23309 3' -54.7 NC_005259.1 + 49088 0.68 0.701306
Target:  5'- cUCGAGGGuGUCAUGgCCG-CCCGCCg- -3'
miRNA:   3'- -GGUUCUC-UAGUACaGGUgGGGCGGac -5'
23309 3' -54.7 NC_005259.1 + 16714 0.68 0.679894
Target:  5'- gCCGAGcAGGUCGcGcUCUGCCUCGCCa- -3'
miRNA:   3'- -GGUUC-UCUAGUaC-AGGUGGGGCGGac -5'
23309 3' -54.7 NC_005259.1 + 7646 0.68 0.669116
Target:  5'- gCCGAGuucGAccgccgucgUCGUGagCGCCCCGCCUc -3'
miRNA:   3'- -GGUUCu--CU---------AGUACagGUGGGGCGGAc -5'
23309 3' -54.7 NC_005259.1 + 25104 0.7 0.60409
Target:  5'- cCCGAGcaAGggCAagGUCgACCCCGCCg- -3'
miRNA:   3'- -GGUUC--UCuaGUa-CAGgUGGGGCGGac -5'
23309 3' -54.7 NC_005259.1 + 63954 0.7 0.60409
Target:  5'- gCAGcGAGAUCucggcgGUCUcCCCCGCCUu -3'
miRNA:   3'- gGUU-CUCUAGua----CAGGuGGGGCGGAc -5'
23309 3' -54.7 NC_005259.1 + 16360 0.7 0.582504
Target:  5'- aCC-GGAGAUCGUGcgugCCGCUgCGCCg- -3'
miRNA:   3'- -GGuUCUCUAGUACa---GGUGGgGCGGac -5'
23309 3' -54.7 NC_005259.1 + 54923 0.71 0.498349
Target:  5'- gCAcAGAGcUCAUGUacCCGCCCCGUCUu -3'
miRNA:   3'- gGU-UCUCuAGUACA--GGUGGGGCGGAc -5'
23309 3' -54.7 NC_005259.1 + 28526 0.72 0.468164
Target:  5'- gCCGAGgaaggauucaAGAUCAUGgCCACCCCGUUc- -3'
miRNA:   3'- -GGUUC----------UCUAGUACaGGUGGGGCGGac -5'
23309 3' -54.7 NC_005259.1 + 42978 0.76 0.274112
Target:  5'- gCCGGG-GAUCAUcGUugCCGCCCCGCCg- -3'
miRNA:   3'- -GGUUCuCUAGUA-CA--GGUGGGGCGGac -5'
23309 3' -54.7 NC_005259.1 + 16188 1.1 0.001249
Target:  5'- uCCAAGAGAUCAUGUCCACCCCGCCUGa -3'
miRNA:   3'- -GGUUCUCUAGUACAGGUGGGGCGGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.